cluster # 9161

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Schistosoma mansoni
cluster # 9161 cluster # 9161 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9161#0 length = 805 sequences # 5

consensus_9161#1 length = 635 sequences # 2
consensus_9161#2 length = 161 sequences # 1

consensusID : consensus_9161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 805
fasta sequence

                              [CANAATTTGGCACGAGGAGTCACACTGGTACTTCTTGTAACTACTACTAAAACCTATCAGTACGAAAAATCAAATAGCTCCTAACCAAAACAAATGAAAAATGCACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGATGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATTTTAGTCTTGCAGTAAACTTGGGTGGCATCACACAACTTTATCTTTTTGAGTAACATTCTGGAAGTACGAGAAGTAATGTAATTTCCTCATCATATCATAATACAATACAAAATGACTTATC]

[+] EMBL CD080864             [CANAATTTGGCACGAGGAGTCACACTGGTACTTCTTGTAACTACTACTAAAACCTATCAGTACGAAAAATCAAATAGCTCCTAACCAAAACAAATGAAAAATGCACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGATGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTNTTTATTGTACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATTNTAGTCTTGCAGTAn                                                                                                          ]
[+] EMBL CD078706             [                                 CTTGTAACTACTACTAAAACCTATCAGTACGAAAAATCAAATAGCTCCTAACCAAAACAAATGAAAAATGCACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGATGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACT                                                                                                                                                            ]
[+] EMBL CD084205             [                                                           aggCGAAAAATCAAATAGCTCCTAACCAAAACAAATGAAAAATGCACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGATGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTt                                                                                                                                                                                               ]
[-] EMBL CD073169             [                                                                                                                                                                                                                                                                                                                     TGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATTTTAGTCTTGCAGTAAACTTGGGTGGCATCACACAACTTTATCTTTTTGAGTAACATTCTGGAAGTACGAGAAGTAATGTAATTTCCTCATCATATCATAATACAATACAAAATGACTTATC]
[-] EMBL AI977053             [                                                                                                                                                                                                                                                                                                                                                  TACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCAACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGAACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATTTTAGTCTTGCAGTAAACTTGGGTGGCATCACACAACTTTATCTTTTTGAGTAACATTCTGGAAGTACGAGAAGTAATGTAATTTCCTCATCATATCATAATACAATACAAAATGACTTATC]




>consensus_9161#0
CANAATTTGGCACGAGGAGTCACACTGGTACTTCTTGTAACTACTACTAAAACCTATCAG
TACGAAAAATCAAATAGCTCCTAACCAAAACAAATGAAAAATGCACATGTACAAGCCTTT
GATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGAT
GATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAA
AAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGC
ACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAA
GACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCA
GAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCT
TTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGT
AAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTG
GCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTTCTAA
TGTAATTCGATTTCTGATTGAATTTTAGTCTTGCAGTAAACTTGGGTGGCATCACACAAC
TTTATCTTTTTGAGTAACATTCTGGAAGTACGAGAAGTAATGTAATTTCCTCATCATATC
ATAATACAATACAAAATGACTTATC

consensusID : consensus_9161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 635
fasta sequence

                              [ACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGATGTATTGTTTTTTTTTCTGATAATTCCAATTCCTCTGATATTTGAAAACTCCAGGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATTTA]

[+] EMBL CD148408             [ACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAATTCCGTTCCAAGTGATGTATTGTTTTTTTTTCTGATAATTCCAATTCCTCTGATATTTGAAAACTCCAGGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATTTA]
[-] EMBL CD199799             [                                                                                                                                                                                                                                                                                                                                                                                     GTACATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGAACTGAGTTTTCTAATGTAATTCGATTTCTGATTGAATT  ]




>consensus_9161#1
ACATGTACAAGCCTTTGATGCATTCGATGCGCTGATGATTGAAATAATCAAATATTCGAA
TTCCGTTCCAAGTGATGTATTGTTTTTTTTTCTGATAATTCCAATTCCTCTGATATTTGA
AAACTCCAGGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAG
TTAATCGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAA
TATGTATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACC
AATTACCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAA
AGTATCCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTA
AAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTC
CCTACATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAA
CATGTTTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGA
GTTTTCTAATGTAATTCGATTTCTGATTGAATTTA

consensusID : consensus_9161#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [CTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAACATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTA]

[+] EMBL BF936684             [CTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAACATCTGGCGTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTA]




>consensus_9161#2
CTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTATCCCAGAAACATCTGGC
GTTCCCTTCAGGACTTTTAAAAGGAGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGC
AGCAGATTGTGAACAACTCCCTACATGTAAATTCACAGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9161#1      ------------------------------------------ACATGTACAAGCCTTTGA 18
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      CANAATTTGGCACGAGGAGTCACACTGGTACTTCTTGTAACTACTACTAAAACCTATCAG 60
                                                                                  

consensus_9161#1      TGC----ATTCGATGCGCTGATGATTGAAATAA-TCAAATATTCGAATTCCGTTCCAAGT 73
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      TACGAAAAATCAAATAGCTCCTAACCAAAACAAATGAAAAATGCACATGTACAAGCCTTT 120
                                                                                  

consensus_9161#1      GATGTATTGTTTTTTTTTCTGATAATTCCAATTCCTCTGATATTTGAAAAC---TCCAGG 130
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      GATGCAT---TCGATGCGCTGATGATTG-AAATAATCAAATATTCGAATTCCGTTCCAAG 176
                                                                                  

consensus_9161#1      -----ATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAAT 185
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      TGATGATTCGGATATTCGTTTTCTTGAATCCCTTGGTGTAAACGTAAGCGAAAAGTTAAT 236
                                                                                  

consensus_9161#1      CGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGT 245
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      CGAAAAAGCTACAAAAGATCATGCCAGGTTTACTAACGAGTTAGATATTGTTAAATATGT 296
                                                                                  

consensus_9161#1      ATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTA 305
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      ATGCACAGAATTTTGGTCATCCGTATACCACAAACAAGTTGATACACTGAAAACCAATTA 356
                                                                                  

consensus_9161#1      CCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTAT 365
consensus_9161#2      ----------------CTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTAT 44
consensus_9161#0      CCAAGACGTTTACGTTCTCACTGTTAATGATTTTCAGCCTTTATTGAAATTCGAAAGTAT 416
                                      ********************************************

consensus_9161#1      CCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGG 425
consensus_9161#2      CCCAGAAA--------------------CATCTGGCGTTCCCTTCAGGACTTTTAAAAGG 84
consensus_9161#0      CCCAGAAAGTATATCAGAAATCCCAAAGCATCTGGCGTTCCCTTCAGGACTTTTAAAAGG 476
                      ********                    ********************************

consensus_9161#1      AGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTAC 485
consensus_9161#2      AGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTAC 144
consensus_9161#0      AGCTTTATGTAGTCTAGGATTGAATTGTGTTGTAGCAGCAGATTGTGAACAACTCCCTAC 536
                      ************************************************************

consensus_9161#1      ATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGT 545
consensus_9161#2      ATGTAAATTCACAGTTA------------------------------------------- 161
consensus_9161#0      ATGTAAATTCACAGTTACAGTGCTTTCTTACAGAGGTATAAGCTGAAATTGTGAACATGT 596
                      *****************                                           

consensus_9161#1      TTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTT 605
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      TTTGGCATTTGTGGATTAAACTGGCCTACTTATATCTGATTTTTTATTGTACTGAGTTTT 656
                                                                                  

consensus_9161#1      CTAATGTAATTCGATTTCTGATTGAATTTA------------------------------ 635
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      CTAATGTAATTCGATTTCTGATTGAATTTTAGTCTTGCAGTAAACTTGGGTGGCATCACA 716
                                                                                  

consensus_9161#1      ------------------------------------------------------------
consensus_9161#2      ------------------------------------------------------------
consensus_9161#0      CAACTTTATCTTTTTGAGTAACATTCTGGAAGTACGAGAAGTAATGTAATTTCCTCATCA 776
                                                                                  

consensus_9161#1      -----------------------------
consensus_9161#2      -----------------------------
consensus_9161#0      TATCATAATACAATACAAAATGACTTATC 805