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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 719 fasta sequence
[ACTTCTGAAGGAATGTTCACATGGATATTGCCTTCGAATTGGCTTGT-GAAGCACTGAGATGTAATGAAGTCCCAGTA-GGGTGTGCTTTTGTTTAT-AAT-GGAGAAGTAATTGCATCT-GGTCGCAACG-AAGTG-AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT-AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT-CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT-CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTT-CTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCG-AAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGGCATCGACTCTTTG-AAATAAATGGAAATAATCGTGAAGGTCTTTCTTTTTATGTTGATGAAAGCGCATTGATTTCATTTTTCACCTCCACTTATCTTATGATTAAACTTTACGCCCAAACCTCATGTTATTTTTGACTTGTTCCAAAACCACCTATAATGGAAAATTAAA]
[-] EMBL CD202907 [ACTTCTGAAGGAATGTTCACATGGATATTGCCTTCGAATTGGCTTGT GAAGCACTGAGATGTAATGAAGTCCCAGTA GGGTGTGCTTTTGTTTAT AAT GGAGAAGTAATTGCATCT GGTCGCAACG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTC ]
[+] EMBL CD078666 [ TGGATATTGCCTTCGAATTGGCTTGT GAAGCACTGAGATGTAATGAAGTCCCAGTA GGGTGTGCTTTTGTTTAT AAT GGAGAAGTAATTGCATCT GGTCGCAACG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTT CTATGCACAAGAAAACGAANATGCTCCTGAAGAACTTCG AAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGGCATCGACTCTTTG AAATAAATGGAAATAATCGTGAAGGTCTTTCTTTTTATGTTGATGAAAGCGCATTGATTTCATTTTTCACCTCCACTTATCTTATGATTAAACTTTACGCCCAAACCTCATGTTATTTTTGACTTGTTCCAAAACCACCTATAATGGAAAATTAAA]
[+] EMBL AA999576 [ GGCTTGTGGAAGCACTGAGATGTAATGAAGTCCCAGTAGGGGTGTGCTTTTGTTTAT AATGGGAGAAGTAATTGCATCTGGGTCGCAACG AAGTGAAATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCG ]
[-] EMBL SM7341 [ gn GAAGCCCTGAGATGTANTG AGTCCCAGTA GGGTGTGCTTTTGTTNATCAAT GGAGAAGTAATTGCATCT GCCCCCACCGAAAGTG AATCCAACTAGAGATGCTACTCCACATGCCGAGATGNTGCCAATTAAGNCGACTAGAACAGTGTTGTCGAAATAACCCAAAAGAACTTGACAAGATTNTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGTNCTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGNTCAGTCCTAAGTGTACACAATTNCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTNCTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCGAAAAACNCAAGCG ]
[-] EMBL AI976255 [ TCCCAGTA GGGTGTGCTTTTGTTTAT AAT GGAGAAGTAATTGCATCT GGTCGCAACG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAAAAGTT CTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCG AAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAA ]
[-] EMBL CD194031 [ TGCATCT GGTCGCANCG AAGTG AATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATANCCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGCTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTT CTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCG AAAACGCAAGCGTG ]
[+] EMBL CD149492 [ ACATGCCGAGATGGTGACAATT AGACGACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTGACCTTTTCGTTACAGTAGAATCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGT CTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATT CTCCTAGTGCAGTCGCTCCACT ]
consensusID : consensus_9165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[TTTTGTCTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTTTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAATAATCGTTGAAGTTGCTTTCTTTTTCATGTTGATGGAAGTCGCATTGATTTTCATTTTTTCACCCTCCAACTTACTCTATATGTATTAAACTTTATCGTACCAAACACTACATGTTTATTTTCTGATCTTGTTTCCAGATAAATCTAACCTATTAAGTTGAAAATATTATAAAACT]
[-] EMBL CD073129 [TTTTGTCTTCCAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTTCAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAGTTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTTTATGCACAAGAAAACGAAAATGCTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATTTTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAATAATCGTTGAAGTTGCTTTCTTTTTCATGTTGATGGAAGTCGCATTGATTTTCATTTTTTCACCCTCCAACTTACTCTATATGTATTAAACTTTATCGTACCAAACACTACATGTTTATTTTCTGATCTTGTTTCCAGATAAATCTAACCTATTAAGTTGAAAATATTATAAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9165#0 ACTTCTGAAGGAATGTTCACATGGATATTGCCTTCGAATTGGCTTGTGAAGCACTGAGAT 60
consensus_9165#1 ------------------------------------------------------------
consensus_9165#0 GTAATGAAGTCCCAGTAGGGTGTGCTTTTGTTTATAATGGAGAAGTAATTGCATCTGGTC 120
consensus_9165#1 ------------------------------------------------------------
consensus_9165#0 GCAACGAAGTGAATGCAACTAGAGATGCTACTCAACATGCCGAGATGGTGACAATTAGAC 180
consensus_9165#1 ------------------------------------------------------------
consensus_9165#0 GACTAGAACAGTGGTGTCGAAATAACCAAAAAGAACTTGACAAGATTTTGGTCGAATGTG 240
consensus_9165#1 ------------------------------------------------------------
consensus_9165#0 ACCTTTTCGTTACAGTAGAACCCTGCATTATGTGTGCTGCTGCTATACGGTTTTGTCTTC 300
consensus_9165#1 --------------------------------------------------TTTTGTCTTC 10
**********
consensus_9165#0 CAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTT 360
consensus_9165#1 CAGCTCATCTGAAAAGTATCACATACGGTGCTCGTAATGAACGGTTCGGTGGATGTGGTT 70
************************************************************
consensus_9165#0 CAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAG 420
consensus_9165#1 CAGTCCTAAGTGTACACAATTCTCCTAGTGCAGTCGCTCCACTAAACTGCATATCCGGAG 130
************************************************************
consensus_9165#0 TTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTCTATGCACAAGAAAACGAAAATG 480
consensus_9165#1 TTGAAGCGGAGGCAGCTGTTGAACTGCTAAAGAAGTTTTATGCACAAGAAAACGAAAATG 190
************************************* **********************
consensus_9165#0 CTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATT 540
consensus_9165#1 CTCCTGAAGAACTTCGAAAACGCAAGCGTGTGATGTAGTCGTATTAAGTAATTGAGCATT 250
************************************************************
consensus_9165#0 TTTATTTTGGCATCGACTCTTTG-AAATAAATGGAAATAATCGTGAAGGT--CTTTCTTT 597
consensus_9165#1 TTTATTTTGTCATCGACTCTTTGTAAATAAATGGAAATAATCGTTGAAGTTGCTTTCTTT 310
********* ************* ******************** * ** ********
consensus_9165#0 TT-ATGTTGATGAAAG-CGCATTGATTTCA--TTTTTCACCTCC--ACTTATCTTATG-- 649
consensus_9165#1 TTCATGTTGATGGAAGTCGCATTGATTTTCATTTTTTCACCCTCCAACTTACTCTATATG 370
** ********* *** *********** ********* * ***** ***
consensus_9165#0 -ATTAAACTTTAC---GCCCAA-ACCTCATGTTA--TTTTTGA-CTTGTTCCAAAACCA- 700
consensus_9165#1 TATTAAACTTTATCGTACCAAACACTACATGTTTATTTTCTGATCTTGTTTCCAGATAAA 430
*********** ** ** ** ****** *** *** ****** * * * *
consensus_9165#0 CCTATAATGGAAAATTAAA-------------- 719
consensus_9165#1 TCTAACCTATTAAGTTGAAAATATTATAAAACT 463
*** * ** ** **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||