cluster # 9167

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9167 cluster # 9167 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9167#0 length = 762 sequences # 5

consensus_9167#1 length = 594 sequences # 2
consensus_9167#2 length = 184 sequences # 1

consensusID : consensus_9167#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 762
fasta sequence

                              [TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGTTGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTCTTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAAATAAATATGTCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTAT-AATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGGTATCTTTATATTCATAAACTGATCAT]

[+] EMBL CD084286             [TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGTTGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTCTTCCTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL SM944                [                                                                                   TTTTTTCTCTCAATATTCANTTTCATTCCTATTCTNCTTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAANTAAATATGTCTTTGGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTGGATAGAAAATATGGTAGAACATGGCATGGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTNATTGTATTAATCGGGTTAAAAAGAACATCTGGAAATTATCATGACA CAATAG TTTGGTATTGATACCGA GGTAGCAAATGG AAAGTCCCAAATTAATA                                                                                                                                                                                                                                         ]
[+] EMBL CD078620             [                                                                                                                                                                    CACATAAATAAATATGTCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTAT AATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGGTATCTTTATATTCATAAACTGATCAT]
[+] EMBL CD084287             [                                                                                                                                                                    CACATAAATAAATATGTCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGA                                                                                                                                                                                                                                                                              ]
[+] EMBL SMAA14130            [                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCACAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTT  AAATATTATCAATAGTCAT                                                            ]




>consensus_9167#0
TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGT
TGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTC
TTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAAATAAATATG
TCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCT
GTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATAT
ATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAA
TATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGG
GCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATA
GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC
GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATA
GTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAGTGGATAATATT
ATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCT
ACAATCATTACATTGGTATCTTTATATTCATAAACTGATCAT

consensusID : consensus_9167#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 594
fasta sequence

                              [GGCCANAATTCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT]

[+] EMBL CD080873             [GGCCANAATTCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAA ]
[-] EMBL CD073084             [                                        ATATGGAACCAGTTATGCAAGAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT]




>consensus_9167#1
GGCCANAATTCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAA
GAAGATGCTGTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATT
GCAACATATATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTT
GGTAAACAATATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTT
GGAGATCGGGCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATG
ACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAA
TATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAAT
GTATTCATAGTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGT
GGATAATATTATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAA
GTTTATTCCTACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT

consensusID : consensus_9167#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATAGTATATTTTGATGT]

[+] EMBL CD135335             [NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATAGTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATAGTATATTTTGATGT]




>consensus_9167#2
NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATAGTTTTGATAT
AGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTACGTTTGATACT
TTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATAGTATATTTTG
ATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9167#0      TTCTCATCAAAATATATATATTTATAGTGTATGATTAAGGTTACTTTTTCTTTTGTCTGT 60
consensus_9167#1      ------------------------------------------------------------
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      TGATTATACAGTGAACATTTGCTTTTTTTCTCTCAATATTCAATTTCATTCCTATTCTTC 120
consensus_9167#1      ------------------------------------------------------------
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      TTCCTTTCCTTTTTTCTAAAAAAAAAACAAAGAACANTAGTACACACATAAATAAATATG 180
consensus_9167#1      --------------------------------------------------GGCCANAAT- 9
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      TCTTTTGGTAAAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCT 240
consensus_9167#1      TCGGCACGAGGAGCTGTTGTAAAAAATGCTGATATGGAACCAGTTATGCAAGAAGATGCT 69
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      GTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATAT 300
consensus_9167#1      GTACAAATAGCTGCAGTAGCAAGAGAAAAATATGAAGTAGACAAAGATATTGCAACATAT 129
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      ATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAA 360
consensus_9167#1      ATTAAACAACATTTTGATAGAAAATATGGTAGAACATGGCATTGTATAGTTGGTAAACAA 189
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      TATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGG 420
consensus_9167#1      TATGGAAGTGATGTTTCCCACGAAGAACGATCCTTCATATACTTTTTTCTTGGAGATCGG 249
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      GCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATA 480
consensus_9167#1      GCAATTTTATTGTATAAATCGGGTTAAAAAGAACATCTTGAAATTATCATGACATCAATA 309
consensus_9167#2      ----------NAATTCGATTGCCCAAAATTCTNTACCTTGAAATTATCATGACATCAATA 50
                                    *  ** *    ***      * ************************

consensus_9167#0      GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC 540
consensus_9167#1      GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC 369
consensus_9167#2      GTTTTGATATAGATACCGATGTTAGCAAATGGCAATGTTCCAAAATAATAATATCATTAC 110
                      ************************************************************

consensus_9167#0      GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATA 600
consensus_9167#1      GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTATTCATA 429
consensus_9167#2      GTTTGATACTTTTAAAAGACATCTGTTTAATTTTTTTTCTATCTCAACAATGTACTCATA 170
                      ****************************************************** *****

consensus_9167#0      GTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAA-GTGGATAATAT 659
consensus_9167#1      GTATATTTTGATGTTTAATTTTCTGTAGACTTCTTTTAACCTTTTAAAAGTGGATAATAT 489
consensus_9167#2      GTATATTTTGATGT---------------------------------------------- 184
                      **************                                              

consensus_9167#0      TATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCC 719
consensus_9167#1      TATGTGTTGCTAGGGTATCATTTTAAAATATTATAATAGTCATGATTGTAAGTTTATTCC 549
consensus_9167#2      ------------------------------------------------------------
                                                                                  

consensus_9167#0      TACAATCATTACATTGGTATCTTTATATTCA-TAAACTGATCAT- 762
consensus_9167#1      TACAATCATTACATTGTTATCTTTATATTCAATAAACTGATCAAT 594
consensus_9167#2      ---------------------------------------------