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Schistosoma mansoni
cluster # 9168 cluster # 9168       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9168#0 length = 903 sequences # 7  
consensus_9168#1 length = 385 sequences # 1  

consensusID : consensus_9168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 903
fasta sequence
                              [AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAACTTCCTAACATGGACTGGATT-ATAGTTTTGGATGAACCTCCCTATAA-AAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA-TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG-AAAGTGTATATCG-CCGGC-AAAAAGT-ATAG-AGTG-ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC-AAAATCTTTTACTCTTC-AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATATGA]

[+] EMBL AI977174             [AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAACTTCCTAACATGGACTGGATTCATAGTTTTGGATGAACCTCCCTATAATAAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGNGATCACTTC                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD078619             [                                                                            GGATTCATAGTTTTGGATGAACCTCCCTATAATAAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTT                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD079609             [                                                                              ATT ATAGTTTTGGATGAACCTCCCTATAA ATGGGTGCTTTCAAAATTGCAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTCAAAAATC TTTACTCTTCAAAGC TTTATTCTATTTTGACCAATGCATTGTGTTTCTTT AAGTGCACAAAAATAATTGCATA                        ]
[-] EMBL CD073871             [                                                                                                                                                                                                                      GGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATAT                       ]
[+] EMBL CD081317             [                                                                                                                                                                                                                                                        aggGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCA                          ]
[-] EMBL CD075149             [                                                                                                                                                                                                                                                                                                    GTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATAT                       ]
[-] EMBL AI014210             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aATTAGGNAAAGTGTATACCGCCCGTCAAAAAAGTYATAGTAGTGTATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATATGA]


>consensus_9168#0 AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAA CTTCCTAACATGGACTGGATTATAGTTTTGGATGAACCTCCCTATAAAAGGGTGCTTTCA AAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAA CACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACC CAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGC TTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGG ATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTC CAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTCATTATCTCTTCGTGATCAC TTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTA CACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTT AGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG GAAAGTGTATATCGCCGGCAAAAAGTATAGAGTGATTAATACATCACTGATCTTCAAAAT GTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGT TGATACTACTAATATTTCAAAATCTTTTACTCTTCAAGCTTTTATTCTATTTTGACCAAT GCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATA TGA



consensusID : consensus_9168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence
                              [TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA]

[-] EMBL CD073082             [TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA]


>consensus_9168#1 TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTG TTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTT TTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAG TATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTT CATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTT TTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCA AAAATAATTGCATATATCAATGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9168#0      AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAA 60
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      CTTCCTAACATGGACTGGATTATAGTTTTGGATGAACCTCCCTATAAAAGGGTGCTTTCA 120
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      AAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAA 180
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      CACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACC 240
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      CAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGC 300
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      TTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGG 360
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      ATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTC 420
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      CAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTCATTATCTCTTCGTGATCAC 480
consensus_9168#1      ------------------------------------------------------------
                                                                                  

consensus_9168#0      TTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTA 540
consensus_9168#1      -------------------------TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTA 35
                                               ************************** ********

consensus_9168#0      CACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTT 600
consensus_9168#1      CACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTT 95
                      ************** ******************** ****** ******* ***** ***

consensus_9168#0      AGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG 660
consensus_9168#1      AGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG 155
                      ** ************ ***** **************************************

consensus_9168#0      GAAAGTGTATATCGCCGGCAAAAAGTATAGAGTGATTAATACATCACTGATCTTCAAAAT 720
consensus_9168#1      GAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAAT 215
                      ************* ******************************* ***** ********

consensus_9168#0      GTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGT 780
consensus_9168#1      GTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGT 275
                      ****** ******** * * ***************************** * **** ***

consensus_9168#0      TGATACTACTAATATTTCAAAATCTTTTACTCTTCAAGCTTTTATTCTATTTTGACCAAT 840
consensus_9168#1      TAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAA 335
                      * * * ****** ********** ******* ************** ************ 

consensus_9168#0      GCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATA 900
consensus_9168#1      GCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA---------- 385
                      *********** ******* ** ***************************          

consensus_9168#0      TGA 903
consensus_9168#1      ---
                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)