These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 903 fasta sequence [AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAACTTCCTAACATGGACTGGATT-ATAGTTTTGGATGAACCTCCCTATAA-AAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA-TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG-AAAGTGTATATCG-CCGGC-AAAAAGT-ATAG-AGTG-ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC-AAAATCTTTTACTCTTC-AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATATGA] [+] EMBL AI977174 [AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAACTTCCTAACATGGACTGGATTCATAGTTTTGGATGAACCTCCCTATAATAAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGNGATCACTTC ] [+] EMBL CD078619 [ GGATTCATAGTTTTGGATGAACCTCCCTATAATAAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTT ] [+] EMBL CD079609 [ ATT ATAGTTTTGGATGAACCTCCCTATAA ATGGGTGCTTTCAAAATTGCAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTCAAAAATC TTTACTCTTCAAAGC TTTATTCTATTTTGACCAATGCATTGTGTTTCTTT AAGTGCACAAAAATAATTGCATA ] [-] EMBL CD073871 [ GGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATAT ] [+] EMBL CD081317 [ aggGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCA ] [-] EMBL CD075149 [ GTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATAT ] [-] EMBL AI014210 [ aATTAGGNAAAGTGTATACCGCCCGTCAAAAAAGTYATAGTAGTGTATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATATGA] consensusID : consensus_9168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA] [-] EMBL CD073082 [TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9168#0 AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAA 60 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 CTTCCTAACATGGACTGGATTATAGTTTTGGATGAACCTCCCTATAAAAGGGTGCTTTCA 120 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 AAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAA 180 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 CACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACC 240 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 CAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGC 300 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 TTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGG 360 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 ATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTC 420 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 CAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTCATTATCTCTTCGTGATCAC 480 consensus_9168#1 ------------------------------------------------------------ consensus_9168#0 TTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTA 540 consensus_9168#1 -------------------------TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTA 35 ************************** ******** consensus_9168#0 CACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTT 600 consensus_9168#1 CACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTT 95 ************** ******************** ****** ******* ***** *** consensus_9168#0 AGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG 660 consensus_9168#1 AGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG 155 ** ************ ***** ************************************** consensus_9168#0 GAAAGTGTATATCGCCGGCAAAAAGTATAGAGTGATTAATACATCACTGATCTTCAAAAT 720 consensus_9168#1 GAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAAT 215 ************* ******************************* ***** ******** consensus_9168#0 GTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGT 780 consensus_9168#1 GTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGT 275 ****** ******** * * ***************************** * **** *** consensus_9168#0 TGATACTACTAATATTTCAAAATCTTTTACTCTTCAAGCTTTTATTCTATTTTGACCAAT 840 consensus_9168#1 TAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAA 335 * * * ****** ********** ******* ************** ************ consensus_9168#0 GCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATA 900 consensus_9168#1 GCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA---------- 385 *********** ******* ** *************************** consensus_9168#0 TGA 903 consensus_9168#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||