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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1408 fasta sequence
[GTTTTATAAGCTTGTCTAAAAGTTGATGTTCTGTTTTGTTATTTTTTATTGAATATTTGGGAGGATACTATAACAATGAATCAAGGTCATTTTTAAGTGGCTCAAATAAATTAACATCAACTGCATCAATGGCTGCAGCGGCTGCAGCTGCGGCTGTTACAGCAGCTGATCGTCACTGGAGACAAATGGAAAATGCTAAATATACTAATCATCATCACCATCCACAACAAATGCATGAACGTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATTCAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGAGGATTCCAGTGAAGAATCAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTAATTCTTGCTCCAATTGGGTCTACAGAAGGCGTGATGAATGACATACCACCAACAGTCTGGGTACCTAATGCTGTTGTGATAATTGCAACTAATATCTCAGGTATCAATGCCAATAATTCAAGAGCACATACTCTTGATTCAGTTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGTCAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCACTTACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAACAACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAAAGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGNCAACATGATTTATTACATTTTAATAAAAAAAGATTTCGTCATCTTTTGACACTGACAGCTTTTACGGGTCGTATGGTGAAACTGGATAGATTATTCACCCAACGTATTATTTATCAAAGTGGTCAAAAAAGTTTATCATATCTAAGTGCTTTACAATATTT]
[+] EMBL CD123076 [GTTTTATAAGCTTGTCTAAAAGTTGATGTTCTGTTTTGTTATTTTTTATTGAATATTTGGGAGGATACTATAACAATGAATCAAGGTCATTTTTAAGTGGCTCAAATAAATTAACATCAACTGCATCAATGGCTGCAGCGGCTGCAGCTGCGGCTGTTACAGCAGCTGATCGTCACTGGAGACAAATGGAAAATGCTAAATATACTAATCATCATCACCATCCACAACAAATGCATGAACGTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATTCAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGA ]
[-] EMBL CD122860 [ CACAACAAATGCATGAACGTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATTCAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGAGGATTCCAGTGAAGAATCAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGGTGCTCGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGATAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAA ]
[+] EMBL CD116061 [ GATGAGGATTCCAGTGAAGAATCAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCTAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGT ]
[+] EMBL CD132228 [ AACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTAATTCTTGCTC ]
[+] EMBL CD192101 [ AAGGAGTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCACTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGG ]
[+] EMBL CD115376 [ TGTTAATGCGATCGCTAGGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAGGTTATGATGTCCCTTTAATTCTTGCTCCAATTGGGTCTACAGAAGGCGTGATGAATGACATACCACCAACAGTCTGGGTACCTAATGCTGTTGTGATAATTGCAACTAATATCTCAGGTATCAATGCCAATAATTCAAGAGCACATACTCTTGATTCAGTTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGTCAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCACTTACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAACAACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAAAGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGNCAACATGATTTATTACATTTTAATA ]
[+] EMBL CD178576 [ ATACTCTTGATTCAGTTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGTCAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCATTTACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAACAACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAAAGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGCAAACATGATTTATTACATTTTAATAAAAAAAGATTTCGTCATCTTTTGACACTGACAGCTTTTACGGGTCGTATGGTGAAACTGGATAGATTATTCACCCAACGTATTATTTATCAAAGTGGTCAAAAAAGTTTATCATATCTAAGTGCTTTACAATATTT]
consensusID : consensus_9173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[GGGAATTCGATTAAAATAACATGCCACGTTACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAATGTTTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATACCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATCGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTATGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTCAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTACTTCTTGCTCCGATT]
[+] EMBL CD115409 [GGGAATTCGATTAAAATAACATGCCACGTTACTGATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAAATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAATGTTTATTCAAAATCAATAGGAAATAACAAGCGAAGAAAGACTATACCTATTGAACGTCAGAAAAACGAACAACTTCTGAGACAATATGTATCGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAATCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTATGACAGTAGAAAATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTCAGATCATATTCTAATGAAGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTACTTCTTGCTCCGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9173#0 GTTTTATAAGCTTGTCTAAAAGTTGATGTTCTGTTTTGTTATTTTTTATTGAATATTTGG 60
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 GAGGATACTATAACAATGAATCAAGGTCATTTTTAAGTGGCTCAAATAAATTAACATCAA 120
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 CTGCATCAATGGCTGCAGCGGCTGCAGCTGCGGCTGTTACAGCAGCTGATCGTCACTGGA 180
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 GACAAATGGAAAATGCTAAATATACTAATCATCATCACCATCCACAACAAATGCATGAAC 240
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 GTGGTCAATTCAAGTCTAAAGATGAATTTGATCTGCAGGATAATCTACAAAGAATCAATT 300
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 CAAAAATGGATACCAATTTCAGTGGCCATGATGATGATGATGAGGATTCCAGTGAAGAAT 360
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 CAAAACAATCTGATTCAAATGAACATAGTTCTAATGAAGATGAAGAAAGTTCTCCAACTG 420
consensus_9173#1 ------------------------GGGAATTCGATTAAAATAAC--ATGCCACGTTACTG 34
* ** ** ** * * * ****
consensus_9173#0 ATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAA 480
consensus_9173#1 ATGGACCATTATTTAATTCAGGAGAACTTTTACTAAATGGTGAAAACATTCCAAATTCAA 94
************************************************************
consensus_9173#0 ATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAAGGAGTATTCAA 540
consensus_9173#1 ATCATGGAACGTTTCTTAAAAAAGACCTGTTGGGAAATCATCAAAGTAATGTTTATTCAA 154
************************************************* * *******
consensus_9173#0 AATCAATAGGAAATAACAAGCGAAGAAAGACTATATCTATTGAACGTCAGAAAAACGAAC 600
consensus_9173#1 AATCAATAGGAAATAACAAGCGAAGAAAGACTATACCTATTGAACGTCAGAAAAACGAAC 214
*********************************** ************************
consensus_9173#0 AACTTCTGAGACAATATGTATTGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAA 660
consensus_9173#1 AACTTCTGAGACAATATGTATCGGATGCTTGTTCAGTTTTATCTATGTTAGACCGTCGAA 274
********************* **************************************
consensus_9173#0 TCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTAGGACAGTAGAAA 720
consensus_9173#1 TCGGTGGTCGACAAACTCGTTTGATAATATGTGTTAATGCGATCGCTATGACAGTAGAAA 334
************************************************ ***********
consensus_9173#0 ATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTTAGATCATATTCTAATGA 780
consensus_9173#1 ATTCAGCATTGAATAAAAAACTTTTGGATTTTATGCATTTGTCAGATCATATTCTAATGA 394
****************************************** *****************
consensus_9173#0 AGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTAATTCTTGCTCCAATTGGGTCTA 840
consensus_9173#1 AGCCACCAACCGGGGGTAAAAGTTATGATGTCCCTTTACTTCTTGCTCCGATT------- 447
************************************** ********** ***
consensus_9173#0 CAGAAGGCGTGATGAATGACATACCACCAACAGTCTGGGTACCTAATGCTGTTGTGATAA 900
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 TTGCAACTAATATCTCAGGTATCAATGCCAATAATTCAAGAGCACATACTCTTGATTCAG 960
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 TTAGTCTGAATGATCCTAACCGAATGCACCGAATGTCTTCCGCTTTAAGATTATCTTTGT 1020
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 CAAATTCTTCAGGAGGATTCAATCCTAAGATTTGGTATTCTATTCATCAGTTATGTCACT 1080
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 TACCCATCTACATAGAAAATGAGCCACTTTGTTTCAGAGTATATGATCAAACCAACGAAC 1140
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 AACCATTTATTAGTCCTGCACGCTCAGCATCAAATATACAACAATCGCATCAAGAGAAAA 1200
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 AGACTGAAGTATCACAGCCAAAATCAATGATCGATCTTTATGTGGGNCAACATGATTTAT 1260
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 TACATTTTAATAAAAAAAGATTTCGTCATCTTTTGACACTGACAGCTTTTACGGGTCGTA 1320
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 TGGTGAAACTGGATAGATTATTCACCCAACGTATTATTTATCAAAGTGGTCAAAAAAGTT 1380
consensus_9173#1 ------------------------------------------------------------
consensus_9173#0 TATCATATCTAAGTGCTTTACAATATTT 1408
consensus_9173#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||