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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1004 fasta sequence
[ATATAGCGCTCCCTCGCCATGACCTGGATGTTTGCTATGTTAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAACTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAAAGACAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACAC-AT-AGAC-ACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGATTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAATACGTAATTATCCAGAACACCATGAATATTTATCCAAATTGGCTCT]
[+] EMBL CD185906 [ATATAGCGCTCCCTCGCCATGACCTGGATGTTTGCTATGTTAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGAC ]
[+] EMBL BF936779 [ TTAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAACTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAAAGACAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACAC AT AGAC ACAGAATCCCGTC ]
[+] EMBL AI975711 [ TAGCGGTCCGTCGGTTGTTTAGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCCAGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCANACAAACTTTTACTTGCGTATGCTCCGAAATGCTG ]
[-] EMBL CD136823 [ TAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAAGGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAACTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCG ]
[+] EMBL CD072833 [ TTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCATACAAACTTTTACTTGCGTATGCTCCGAAATGC ]
[+] EMBL CD146812 [ ACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTGGCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAGAGACAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACACAATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGATTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAATACGTAATTATCCAGAACACCATGAATATTTATCCAAATTGGCTCT]
consensusID : consensus_9175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[CTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAAGTACCATGTCGATACATAACTTTAATTTCAGCTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGATATACTATCTCA]
[+] EMBL CD097368 [CTTCGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATTAAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGGATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTAGGACTCCGTGTTGACCCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACCCCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAATCAAACAAAGTACCATGTCGATACATAACTTTAATTTCAGCTTTTACTTGCGTATGCTCCGAAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAAAGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGATATACTATCTCA]
consensusID : consensus_9175#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[AATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGGTTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAACAGTAACTATCATTGAAAACAAAAGATAGCATGATTCATACAATTTTTTTCTTTGGAAAATGGATTGAACTCAAAAAGTATTTTAACTTAAACCTTTGAATCTTTGATTATTGTAA]
[+] EMBL CD146417 [AATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTGTTCGCTGGGGTATACCAATGCAACGTGCAGTGAGGTTTCAACAAAATTACTTACAATGAAAGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAACAGTAACTATCATTGAAAACAAAAGATAGCATGATTCATACAATTTTTTTCTTTGGAAAATGGATTGAACTCAAAAAGTATTTTAACTTAAACCTTTGAATCTTTGATTATTGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9175#0 ATATAGCGCTCCCTCGCCATGACCTGGATGTTTGCTATGTTAGCGGTCCGTCGGTTGTTT 60
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 AGTAAAAATGTCATTTTAAGACATTTGAGTGCTACTAAATCTGTTTCGTGTTCAAGTGCC 120
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 AGATGTATTTCAACCGTTGAAAGCGCAAAGAAAAGAACTTACGAACCAAATTTGGCTCTT 180
consensus_9175#1 ---------------------------------------------------------CTT 3
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 CGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATT 240
consensus_9175#1 CGTTTTTCCGATAATACTGGCTTGACTGATATAGATAAATTTCTGCGTAAACAAAGGATT 63
consensus_9175#2 ----AATAAGACAACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACAC 56
* ** ** * * * * ** * *** * *
consensus_9175#0 AAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGG 300
consensus_9175#1 AAAGGTGCTTTGTACAGCTGCGAAGAAAATGAGCAGGCTTCAAAAGGTTTTTGGGCTCGG 123
consensus_9175#2 AAGATTAGTGTGTTC-GCTGGGGTATACCAATGCAACGTGCAGTGAGGTTTCAA-CAAAA 114
** * * *** * **** * * *** * ** * *** *
consensus_9175#0 ATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTA 360
consensus_9175#1 ATTCTTAAAGCTGGGGATATGGACTTAGTCGAAAGATATTTAAATATGAGAGTCAAATTA 183
consensus_9175#2 TTACTTACAATGAAAGAT-CACTTTCCGTTGGAGTTTGCT--ATTGACACTGTCAAAATA 171
* **** * *** * ** * * * * * * * ****** **
consensus_9175#0 GGACTC-CGTGTTGAC--CCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACC 417
consensus_9175#1 GGACTC-CGTGTTGAC--CCAGAAAAAGTCATAAAAGATATGAATGATGCTGGATTAACC 240
consensus_9175#2 CTCTTAGCGAAAGGACGCCCAGCTGCTGCTCTGGAAATTTTTAAAATAACAGTAACTATC 231
* ** *** **** * * ** * * ** * * * * *
consensus_9175#0 CCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAAT 477
consensus_9175#1 CCTAACGCCTGGACATATGCCTCCTTTATTCATCAAAGTTGTGCTGTCGGAGATATGAAT 300
consensus_9175#2 ATTGAAAACAAAAGATAG-----CATGATTCATACAATTTTTTTCTTTGGAAA-ATGGAT 285
* * * * *** * * ****** ** ** * * *** * *** **
consensus_9175#0 CAAACAAA-------------------------------CTTTTACTTGCGTATGCTCCG 506
consensus_9175#1 CAAACAAAGTACCATGTCGATACATAACTTTAATTTCAGCTTTTACTTGCGTATGCTCCG 360
consensus_9175#2 TGAACTCA---------------AAAAGT---ATTTTAACTTAAACCTTTGAATCTTTGA 327
*** * *** ** * * ** *
consensus_9175#0 AAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAA 566
consensus_9175#1 AAATGCTGGATTCAAGCCCACTCGTTACATCTTTTCTCAGATTCTACACGGTTACGTGAA 420
consensus_9175#2 TTATTGTAA--------------------------------------------------- 336
** *
consensus_9175#0 AGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGAAATACTATCTCAAATGGGTTTGTG 626
consensus_9175#1 AGCTGGATTACCTGAGGAAGTTTCTTCTACGCAGGATATACTATCTCA------------ 468
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 GCCATCGAAGTTTGCCTATGAAGGCCTTTTGTCCGCTTACGCTGATATTGGTGACAAAGA 686
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 CAGTTTATTACGAACTCTGGATGAGGCTTACGCTGTACTCCCTTCAATAGAACACATAGA 746
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 CACAGAATCCCGTCAAATCTCACCTGTTTTACTTTTGGATCTGTACACAAGATTAGTGTG 806
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 TTCGCTGGGGTATACCAATGCAACGTGCAGTGAGATTTCAACAAAATTACTTACAATGAA 866
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 AGATCACTTTCCGTTGGAGTTTGCTATTGACACTGTCAAAATACTCTTAGCGAAAGGACG 926
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 CCCAGCTGCTGCTCTGGAAATTTTTAAAATAATACGTAATTATCCAGAACACCATGAATA 986
consensus_9175#1 ------------------------------------------------------------
consensus_9175#2 ------------------------------------------------------------
consensus_9175#0 TTTATCCAAATTGGCTCT 1004
consensus_9175#1 ------------------
consensus_9175#2 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||