cluster # 9176

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Schistosoma mansoni
cluster # 9176 cluster # 9176 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9176#0 length = 862 sequences # 7

consensus_9176#1 length = 277 sequences # 1

consensusID : consensus_9176#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 862
fasta sequence

                              [AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAGGTTATTGTTTGTAAACAGA-CAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGAGATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTCTAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATT-CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAAATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTACGTATTCCACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTATTTGATATTTTTTTGAACCTTGAGTCCA]

[+] EMBL AI975491             [AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAGGTTATTGTTTGTAAACAGA CAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGAGATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTCTAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATT CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAA                                                                                                                                                                                                               ]
[-] EMBL BE431214             [     ATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAGGTTATTGTTTGTAAACAGACCACCAAGAGGATAAATTCAACCGATCTGGCATTCAATATGAGATAGAATTTATGTGCG TTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTCTAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATT CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTG CAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATT                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AI977369             [                                                                                                                                                                                                            GAATATGCATATGTTGAATGACTACGTTGATATAAATGAAAGAGATTAGCATAANCTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTANAAAGAACAATT CATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAAATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGA                                                                                                ]
[-] EMBL CD115893             [                                                                                                                                                                                                                                                  AAAGAGATTAGCATAAGCTGCATGATCGAATGCGATTCCATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCCATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACATTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAACATCAACATCATCTAATGGACACCAATATCTAACACCATCAGGTAATGTACCAAAATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTACGTATTCCACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTATTTGATATTTTTTTGAACCTTGAGTCCA]
[-] EMBL AI168856             [                                                                                                                                                                                                                                                                                                                                                                                      CAG TAAAGTT CCAAGGC TG TGTAGTCGATAAACA TTCGACACA TTTCTTA TACCA TTGAA TCATTCTTCCAATTTGT GAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATC                                                                                                                                                                                                                                                                        ]
[-] EMBL AI168863             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ATTACCATTTGAA TCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCA                                                                                                                                                                                                                                                                       ]
[-] EMBL AI168857             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ATTACCATTTGAA TCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATTGTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCA                                                                                                                                                                                                                                                                       ]




>consensus_9176#0
AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAG
GTTATTGTTTGTAAACAGACAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGA
GATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTC
TAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAAT
GAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCA
CAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAG
ATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACA
TTTTCTTATTACCATTTGAATTCATTCTTTCAATTTGTGGAATTAAACGTAATAATAATT
GTGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAAATGTAT
GTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATTTATCAA
CATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAAAATAGT
TATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGAAACGAT
TTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTACGTATTC
CACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTATTTGAT
ATTTTTTTGAACCTTGAGTCCA

consensusID : consensus_9176#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [ATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACCTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTATTGCTCAGAATTCCTACTAAAAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAATTCTAGCTTAGATCGATTCATGAATTCAACTAATAGAA]

[-] EMBL CD158197             [ATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACCTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTATTGCTCAGAATTCCTACTAAAAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAATTCTAGCTTAGATCGATTCATGAATTCAACTAATAGAA]




>consensus_9176#1
ATGTTCCATTAAACGATTCACAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTG
TTTTACACGAATTAAATCAGATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAG
TCGATAAACATTTCGACACCTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTAT
TGCTCAGAATTCCTACTAAAAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAAT
TCTAGCTTAGATCGATTCATGAATTCAACTAATAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9176#0      AAAATATGATTATTTCATAAGAAAAATAAAAGTTAATTGGTCATATAAAAAGTTAATTAG 60
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GTTATTGTTTGTAAACAGACAACAAGAGGATAAATTCAACCGATCTGGCATTCAATATGA 120
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GATAGAATTTATGTGCGTTTTCTTTTTAAAGTTGTCCACTATGTGTAACAGTAGCCAGTC 180
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TAGAGATACAACTTTGTATTTTGGAATATGCATATGTTGAATGACTACGTTGATATAAAT 240
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GAAAGAGATTAGCATAAACTGCATGATCGAATGCGATACCATGTTCCATTAAACGATTCA 300
consensus_9176#1      ----------------------------------------ATGTTCCATTAAACGATTCA 20
                                                              ********************

consensus_9176#0      CAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAG 360
consensus_9176#1      CAACCGCTTCAGGTGTTAAAAAGAACAATTCATATAATTGTTTTACACGAATTAAATCAG 80
                      ************************************************************

consensus_9176#0      ATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACACA 420
consensus_9176#1      ATTCATGTGTTTCAGTTAAAGTTGCCAAGGCTTGTTGTAGTCGATAAACATTTCGACAC- 139
                      *********************************************************** 

consensus_9176#0      TTTTCTTATTACCATTTGAATTCATTCT---TTCAATTTGTGGAATTAAA--CGTAATAA 475
consensus_9176#1      CTAAATAATAGCAATTCGAAAAAAAAGGAAGTTAATTTTATTGCTCAGAATTCCTACTAA 199
                       *   * **  * *** ***   *       ** * *** * *     **  * ** ***

consensus_9176#0      TAATTG-TGAAATGAAATCACCAAGACCATCGAAAATAAATCGAAATTTATGCCGACTAA 534
consensus_9176#1      AAATTGGTGTTTCTTAAACAAATATTTCATCTAGAATAAATTCTAGCTTAGATCGATTCA 259
                       ***** **      ** **   *   **** * *******   *  ***   *** * *

consensus_9176#0      ATGTATGTATCGACAAATCTTTCACTTGTTCAATATATCCAAGAAAATCTGTCACATATT 594
consensus_9176#1      TGAATTCAACTAATAGAA------------------------------------------ 277
                           *  *   * * *                                           

consensus_9176#0      TATCAACATCAACATCATCTAATGGACACCAATATTTAACACCATCAGGTAATGTACCAA 654
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      AATAGTTATATGCCTGTATTCTTACTTCTAAATAAGTCATTAATAGACATGCTTCTGAGA 714
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      AACGATTTAATTCTTTTGCATAAGAAACAAATGAATTATAATAATAATCGGAAGGTGTAC 774
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      GTATTCCACCAACTACGGATTCACTTCTGTTAGCATTAATAGATACAGTAGAAGATTTTA 834
consensus_9176#1      ------------------------------------------------------------
                                                                                  

consensus_9176#0      TTTGATATTTTTTTGAACCTTGAGTCCA 862
consensus_9176#1      ----------------------------