These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 995 fasta sequence [AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGATCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCGATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTGACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCTAAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAG-AAAATAGNCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAAT-AAGCTACACATAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGA-CAGNNTGNTGTAAACAATTAAGCAATAATTGTAGTGACAGAG] [+] EMBL CD187193 [AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGATCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCGATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATT ] [-] EMBL CD156337 [ TGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCT AAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCT ] [-] EMBL CD155932 [ TGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGGAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCT ] [-] EMBL CD193365 [ ATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTG ] [-] EMBL CD147691 [ CAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTGACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCTAAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCA ] [+] EMBL CD072207 [ CGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAG AAAATAGNCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAAT AAGCTACACATAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGA CAGNNTGNTGTAAACAATTAAGCAATAATTGTAGTGACAGAG] [+] EMBL CD120316 [ GGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAAATAGCAACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTAAATAAAGCTACACATAAATACTGTTTAATAGCAACTATAAATATTTCACTCGTTGAAAAT AACGGACCAGGTTGTTGTAAAC ] consensusID : consensus_9181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTGGGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATATCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA] [-] EMBL CD129002 [GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTGGGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATATCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9181#0 AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGA 60 consensus_9181#1 ------------GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGA 48 * * * * ** ** * * * ** * ** * ** consensus_9181#0 TCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCG 120 consensus_9181#1 GTATC-TAGGCTGGGAGCACAGTTCCACTA-ACAGCACATGATAACGAAAAGACTTATTT 106 * * ** ** * ** * * * * * *** * ** * * * * * consensus_9181#0 ATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGAT 180 consensus_9181#1 CTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAAT-------CAGCT 159 * ** * **** *** * ** * * * * * * ** * *** * consensus_9181#0 TCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTG 240 consensus_9181#1 ATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCC 219 * * * * * * * * *** * ** *** * * * * consensus_9181#0 AACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCA 300 consensus_9181#1 AAGA----CGATCGAGTCACATATATC---------GTATAAAGTAATGGTAATGTATAA 266 ** * *** ** **** ** * * * ** **** * * consensus_9181#0 GGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCG 360 consensus_9181#1 ATATTGT--TTGGAACTACT--CACCTAGTAAAGTCATATTATGACTACCATCCACACCG 322 * * * * ** * ************************************ consensus_9181#0 GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAA 420 consensus_9181#1 GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAAC-TAAA 381 ******************************************************* **** consensus_9181#0 AACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAA 480 consensus_9181#1 AACGA-TGGGAT-CTGGATTAATAAAA--------------------------------- 406 ***** ****** *********** ** consensus_9181#0 ATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTT 540 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 GACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCT 600 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 AAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGA 660 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 TAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATT 720 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 AATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAG 780 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 AATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAATAG 840 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 NCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAATAAGCTACACA 900 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 TAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGACAGNNTG 960 consensus_9181#1 ------------------------------------------------------------ consensus_9181#0 NTGTAAACAATTAAGCAATAATTGTAGTGACAGAG 995 consensus_9181#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||