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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 995 fasta sequence
[AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGATCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCGATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTGACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCTAAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAG-AAAATAGNCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAAT-AAGCTACACATAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGA-CAGNNTGNTGTAAACAATTAAGCAATAATTGTAGTGACAGAG]
[+] EMBL CD187193 [AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGATCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCGATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATT ]
[-] EMBL CD156337 [ TGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCT AAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCT ]
[-] EMBL CD155932 [ TGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGGAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCT ]
[-] EMBL CD193365 [ ATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTG ]
[-] EMBL CD147691 [ CAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTGACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCTAAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCA ]
[+] EMBL CD072207 [ CGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAG AAAATAGNCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAAT AAGCTACACATAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGA CAGNNTGNTGTAAACAATTAAGCAATAATTGTAGTGACAGAG]
[+] EMBL CD120316 [ GGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAAATAGCAACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTAAATAAAGCTACACATAAATACTGTTTAATAGCAACTATAAATATTTCACTCGTTGAAAAT AACGGACCAGGTTGTTGTAAAC ]
consensusID : consensus_9181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTGGGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATATCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA]
[-] EMBL CD129002 [GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTGGGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATATCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9181#0 AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGA 60
consensus_9181#1 ------------GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGA 48
* * * * ** ** * * * ** * ** * **
consensus_9181#0 TCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCG 120
consensus_9181#1 GTATC-TAGGCTGGGAGCACAGTTCCACTA-ACAGCACATGATAACGAAAAGACTTATTT 106
* * ** ** * ** * * * * * *** * ** * * * * *
consensus_9181#0 ATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGAT 180
consensus_9181#1 CTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAAT-------CAGCT 159
* ** * **** *** * ** * * * * * * ** * *** *
consensus_9181#0 TCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTG 240
consensus_9181#1 ATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCC 219
* * * * * * * * *** * ** *** * * * *
consensus_9181#0 AACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCA 300
consensus_9181#1 AAGA----CGATCGAGTCACATATATC---------GTATAAAGTAATGGTAATGTATAA 266
** * *** ** **** ** * * * ** **** * *
consensus_9181#0 GGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCG 360
consensus_9181#1 ATATTGT--TTGGAACTACT--CACCTAGTAAAGTCATATTATGACTACCATCCACACCG 322
* * * * ** * ************************************
consensus_9181#0 GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAA 420
consensus_9181#1 GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAAC-TAAA 381
******************************************************* ****
consensus_9181#0 AACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAA 480
consensus_9181#1 AACGA-TGGGAT-CTGGATTAATAAAA--------------------------------- 406
***** ****** *********** **
consensus_9181#0 ATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTT 540
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 GACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCT 600
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 AAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGA 660
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 TAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATT 720
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 AATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAG 780
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 AATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAATAG 840
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 NCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAATAAGCTACACA 900
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 TAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGACAGNNTG 960
consensus_9181#1 ------------------------------------------------------------
consensus_9181#0 NTGTAAACAATTAAGCAATAATTGTAGTGACAGAG 995
consensus_9181#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||