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Schistosoma mansoni
cluster # 9181 cluster # 9181       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9181#0 length = 995 sequences # 7  
consensus_9181#1 length = 406 sequences # 1  

consensusID : consensus_9181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 995
fasta sequence
                              [AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGATCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCGATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTGACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCTAAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAG-AAAATAGNCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAAT-AAGCTACACATAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGA-CAGNNTGNTGTAAACAATTAAGCAATAATTGTAGTGACAGAG]

[+] EMBL CD187193             [AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGATCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCGATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD156337             [                                                                                                                                                               TGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCT AAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD155932             [                                                                                                                                                               TGTGCTACTGACTCGACAGATTCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTGAACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCAGGGTCATCATAAGGTTTAACAGCGCCTAGGAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD193365             [                                                                                                                                                                                                                                                                                                                                                                                                                  ATTGGTTCAGAACCTAAAAACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD147691             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAACGTAAAATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTTGACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCTAAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCA                                                                                                                                                                                                                                                                          ]
[+] EMBL CD072207             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGATAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATTAATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAG AAAATAGNCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAAT AAGCTACACATAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGA CAGNNTGNTGTAAACAATTAAGCAATAATTGTAGTGACAGAG]
[+] EMBL CD120316             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAGAATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAAATAGCAACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTAAATAAAGCTACACATAAATACTGTTTAATAGCAACTATAAATATTTCACTCGTTGAAAAT AACGGACCAGGTTGTTGTAAAC                           ]


>consensus_9181#0 AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGA TCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCG ATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGAT TCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTG AACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCA GGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCG GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAA AACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAA ATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTT GACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCT AAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGA TAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATT AATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAG AATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAATAG NCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAATAAGCTACACA TAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGACAGNNTG NTGTAAACAATTAAGCAATAATTGTAGTGACAGAG



consensusID : consensus_9181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence
                              [GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTGGGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATATCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA]

[-] EMBL CD129002             [GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTGGGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATATCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCATATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA]


>consensus_9181#1 GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGAGTATCTAGGCTG GGAGCACAGTTCCACTAACAGCACATGATAACGAAAAGACTTATTTCTCTGGGCCAATGA CCAACATTTCTTAGGAAGGTCAGTTTATAATAATCAGCTATACTGACTGAACTAATAAAT GGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCCAAGACGATCGAGTCACATATA TCGTATAAAGTAATGGTAATGTATAAATATTGTTTGGAACTACTCACCTAGTAAAGTCAT ATTATGACTACCATCCACACCGGCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGC CAACATTGGTTCAGAACTAAAAACGATGGGATCTGGATTAATAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9181#0      AAGCCCGATAAAAATTCCCTCATAGCAGAAACGAAATCTTTGTCAGTGAAATCAAACTGA 60
consensus_9181#1      ------------GACGTACGTGTTGTGGATTTGATGTTATGAAAAATGGACAGAACCCGA 48
                                   *    *   * *  **   **  *  *    * ** *   ** * **

consensus_9181#0      TCAACATATGCATACATAACGCGTAGATTGTATGGTTCATTTTCACCGAGAAAATGACCG 120
consensus_9181#1      GTATC-TAGGCTGGGAGCACAGTTCCACTA-ACAGCACATGATAACGAAAAGACTTATTT 106
                        * * ** **    *  **   *  * *  *  *  ***  * **  * * * * *   

consensus_9181#0      ATATGTGATTTTGACAAACGATCCTCAACTAAGAGAAACTGTGCTACTGACTCGACAGAT 180
consensus_9181#1      CTCTGGGCCAATGACCAACATTTCTTAGGAAGGTCAGTTTATAATAAT-------CAGCT 159
                       * ** *    **** ***  * ** *   * *  *   * *  ** *       *** *

consensus_9181#0      TCTCCAATCAATCCATTTTCTTGCAGTAATTGCAAACAACGAAGAGGTTGATTCTGATTG 240
consensus_9181#1      ATACTGACTGAACTAATAAATGGTTTTAACTTGAAGTCCTGAAAGTGGTAGCTGAATTCC 219
                         *  *   * * * *   * *   *** *  **     ***   * *   *    *  

consensus_9181#0      AACAATGCTAATCCAGATTCATAAATTTCTTTTTGTGCCTTGCGAGATTCAAATGCTTCA 300
consensus_9181#1      AAGA----CGATCGAGTCACATATATC---------GTATAAAGTAATGGTAATGTATAA 266
                      ** *      *** **   **** **          *  *   *  **   ****  * *

consensus_9181#0      GGGTCATCATAAGGTTTAACAGCGCCTAGTAAAGTCATATTATGACTACCATCCACACCG 360
consensus_9181#1      ATATTGT--TTGGAACTACT--CACCTAGTAAAGTCATATTATGACTACCATCCACACCG 322
                         *  *  *  *   **    * ************************************

consensus_9181#0      GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAACCTAAA 420
consensus_9181#1      GCATTTTCTGCTGTATTAGTATTACTGCCACTATTGGCCAACATTGGTTCAGAAC-TAAA 381
                      ******************************************************* ****

consensus_9181#0      AACGACTGGGATTCTGGATTAATATAAAGCTCCTGAGACCATTCAGTCATACAACGTAAA 480
consensus_9181#1      AACGA-TGGGAT-CTGGATTAATAAAA--------------------------------- 406
                      ***** ****** *********** **                                 

consensus_9181#0      ATCAGTACTAAACACTCCAAACCACTAGATCGTAATATTTGTTGCTGTTGCTGCTGACTT 540
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      GACGACGATGTATTATTACCATGTTCAGCGACCAGATAACGTCCTTGAGCAATTTTAGCT 600
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      AAATCTGTTGTTAGTCGTTCGAATATGTTCGCCATACTTAAATCACAATCATAATTTAGA 660
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      TAAATATCAACTAAGCATTGTGCATCACCACATATACGTTTCAATGCATCAATAACAATT 720
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      AATTTATGTCCATACGATGACTTGGATGATTCCAAAATGAGTAATAAGACGTCTTTGAAG 780
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      AATACTTCGATTTGTCTTTTTAAGTGCGGTTTGAAATATGTTAATAGGGCAAGAAAATAG 840
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      NCACAGATAACTCGAATATTTCCACAATTGGTGAAGTACCATTTTTTAATAAGCTACACA 900
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      TAAATACTGGTTAATAGCAGCTATAAATATTTCACTCGNTGAAAATAAACGGACAGNNTG 960
consensus_9181#1      ------------------------------------------------------------
                                                                                  

consensus_9181#0      NTGTAAACAATTAAGCAATAATTGTAGTGACAGAG 995
consensus_9181#1      -----------------------------------
                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)