cluster # 9184

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Schistosoma mansoni
cluster # 9184 cluster # 9184 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9184#0 length = 1314 sequences # 7

consensus_9184#1 length = 217 sequences # 1

consensusID : consensus_9184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1314
fasta sequence

                              [TTCCTGAACTTTGGTGACGAAAGTACAATCATTCATATTTGATATGAAAACAAGGGAGAAGTTTCAAACTTTCTCGTAGCAACTAAGAAGAATGTCAATACTTAACGTATCATATGGTCACAATAGTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGAACTATATTGAACTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTTTGATATTCTTAATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGTTTATTAAGATGATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGATTTGATCTGATTTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAGATAACTTCACGACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT--TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG-GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTATTAATGTGATCGATAAAAAA-GGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCACTTCAC]

[-] EMBL AI618809             [TTCCTGAACTTTGGTGACGAAAGTACAATCATTCATATTTGATATGAAAACAAGGGAGAAGTTTCAAACTTTCTCGTAGCAACTAAGAAGAATGTCAATACTTAACGTATCATATGGTCACAATAGTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGAACTATATTGAACTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTTTGATATTCTTAATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGTTTATTAAGATGATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGATTTGATCTGATTTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAGATAACTTCACGACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCTAGCTTGTTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD124281             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT  TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTAACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATACCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACGGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTATTAATGTGATCGATAAAAAA GGGAAACCAGTGA                                                                                                                                              ]
[+] EMBL CD124221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT  TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTT                                                                                                                                                                                 ]
[+] EMBL CD124292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCTTATCTAATCGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCT  TTTGTTTTAGATGAAGAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGAAATCTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGG GGAATTATTCGGTTTTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTNTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTT                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD194100             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGAG TGCTGGNNGAATATTTCGTTNNTTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTT                                                                                                                                                                                 ]
[-] EMBL AI976875             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGGTTCTTGTTCATAGTTACGATGGTTACCATTATTATTATTGTTA TCGAAGAGCTGATAGAATGTACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTATTAATGTGATCGATAAAAAAGGGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCACTTCAC]
[+] EMBL CD150062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTAATGTGATCGATAAAAAAGGGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCA                      ]




>consensus_9184#0
TTCCTGAACTTTGGTGACGAAAGTACAATCATTCATATTTGATATGAAAACAAGGGAGAA
GTTTCAAACTTTCTCGTAGCAACTAAGAAGAATGTCAATACTTAACGTATCATATGGTCA
CAATAGTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAA
TAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGAACTATATTGAA
CTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTTTGATATTCTTA
ATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGTTTATTAAGATG
ATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGATTTGATCTGAT
TTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAGATAACTTCACG
ACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAATCGTAACATAAG
TTTTTCAAGTTTATCTTCAAGTAATAAATATGCTTTTGTTTTAGATGAAGAAGTAAACCC
GTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATAAGAGAAAGTGG
ATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTATTATCATTTGA
AATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTGGAAGAATTTTG
ATTGCTTTTACGAATCAGACGATTGAGTTGCTGGGGAATTATTCGGTTTTTGTTCATATT
CACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATGTACCTTGATTG
GTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAATATTATCTCCTA
CATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTCATTTCCAGAAA
GATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGACAGATTGTAAAT
TTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGTAGTTGATTTAT
TAATGTGATCGATAAAAAAGGGAAACCAGTGATACTATCATATCCCATAGACCATCCAGG
AGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTGGTTAGCTCGAA
AGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCACTTCAC

consensusID : consensus_9184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGGGAAAGTTTCAAACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCATTATGGGTCACATTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAATAAGATAATCCGAAAATTTTTATAAGGTAACAAG]

[+] EMBL BE431224             [TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGGGAAAGTTTCAAACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCATTATGGGTCACATTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAATAATAAGATAATCCGAAAATTTTTATAAGGTAACAAG]




>consensus_9184#1
TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGGGAAAGTTTCAA
ACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCATTATGGGTCACA
TTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGATGGTAATAATAA
TAATAAGATAATCCGAAAATTTTTATAAGGTAACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9184#0      TTCCTGAACTTTGGTG-ACGAAAGT-ACAATCATTCATATTT-GATATGAAAA-CAAGGG 56
consensus_9184#1      -----------TGGTATGCGAAAGTTACAATCATTCATATTTTGATATGGAAAGCAAGGG 49
                                 ****   ******* **************** ****** *** ******

consensus_9184#0      AGAAGTTTCAAACTTT-CTCGTAGCAACTAAGAAGAATGT-CAATACTTAACGTATCA-- 112
consensus_9184#1      GAAAGTTTCAAACTTTTCTCGTAGCAACTAAGAAGAATGTTCAATACTTAACGTATTCAT 109
                        ************** *********************** ***************    

consensus_9184#0      TATGG-TCACAATAGTTTTTTT--ATACAATAAATAAACTATTCACATGATGATGATGAT 169
consensus_9184#1      TATGGGTCACATTAGTTTTTTTTTATACAATAAATAAACTATTCACATGATGATGATGAT 169
                      ***** ***** **********  ************************************

consensus_9184#0      GGTAATAATAATAAGAATAATCCAGAAAAAATATTATAAAGTAAACAAGAAAGAAACTGA 229
consensus_9184#1      GGTAATAATAATAATAAGATAATCCGAAAATTTTTATAAGGTAA-CAAG----------- 217
                      ************** ** *       **** * ****** **** ****           

consensus_9184#0      ACTATATTGAACTTTCAAAGAAATTGGATAAAGTATCATGAAGCGATGATTTACTTGTTT 289
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TGATATTCTTAATTAGAATCTATATGAATTTCTCTAGAGCCTATGGATGAATGATCTTGT 349
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TTATTAAGATGATTATTAGATGATTGATCAGTTGAACTGATATCTGGTTGCTGTTGATGA 409
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TTTGATCTGATTTGTGTTAGTTTGTTTTCAAGATTTTTAAGAGCATTTTGAACAGCCAAG 469
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      ATAACTTCACGACGTTTATTTCTAATGAATATTTCACCAGATGAATTGATCTTATCTAAT 529
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      CGTAACATAAGTTTTTCAAGTTTATCTTCAAGTAATAAATATGCTTTTGTTTTAGATGAA 589
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GAAGTAAACCCGTTAATCTCAGTTTCTATTTCTGCAAGTTCACATTGAGCTTGTTCTATA 649
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      AGAGAAAGTGGATCTAATCCTGTTGGTTGACATACATTTTCATTATTATCACTATTATTA 709
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TTATCATTTGAAATTTTAACAGAAACAGATTTGATAGGAATTGATTCACTCTTCTCAGTG 769
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GAAGAATTTTGATTGCTTTTACGAATCAGACGATTGAGTTGCTGGGGAATTATTCGGTTT 829
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TTGTTCATATTCACGATGGTTACCATTATTATTATTGTTATTCGAAGAGCTGATAGAATG 889
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TACCTTGATTGGTATTGGTTCACCAACATTATCATAATATGACTGAGTTTTACGTTGAAT 949
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      ATTATCTCCTACATTGCCTACTTTAATATCTCCTGGATTAGAAGGATCGGTCACTGGTTC 1009
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      ATTTCCAGAAAGATTATACTGTCGACGATTATTAAGAGATTCAGATGAATAAGACGGGAC 1069
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      AGATTGTAAATTTTGTATAGTATTACTTTGAGTTTTAGACTTTCGCGGATCTTCCCATGT 1129
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      AGTTGATTTATTAATGTGATCGATAAAAAAGGGAAACCAGTGATACTATCATATCCCATA 1189
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GACCATCCAGGAGGTAAACCCTGTGAGCTCATAATTTGTACACCAGATAGAAGTCAGCTG 1249
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      GTTAGCTCGAAAGATTAACCGAAAAGCTTTGCAATGCAATCCAGCAACTTAGCGACTCAC 1309
consensus_9184#1      ------------------------------------------------------------
                                                                                  

consensus_9184#0      TTCAC 1314
consensus_9184#1      -----