These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 897 fasta sequence [TTCGGCACGAGGGCCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCTTTTCCTACTAAAATTGCATTTATGATAAACACCTAGTGTTATGAATAACATTGAAATCTGCCGGTCACCTTTGAAATAGCATTCAGCATTATTATGTATTTATTTAGTATTTATATACAGGGATACGTGCTATTGTGCAGTTCCACTTTTCCAAGTGCTTAACTAATTACATAAAGTAAAATGGGATAAATGAATATTAAGAATAAATCTCAGTCAATGTTAGTTCCTGTGATTAATTAATTCTTCCAATCTTTTTTCTATGATAAAGCTCTTTTTTGTATTCTGTTTCACTGGATAACAAATCATTCATTTTTATACATACATGTGTGTTGGGTCGGTTTAAACGAAAACGTAGACCTTATTCAACATTCCACTTGTATGATGAAAAATGTGACAGAGTACGTTACATTGAGGGCGAACTNTNTTGTTTCTACTTCTTATGTCTTTTCACATGNCAACACGTTNTTTTACAAAGTTACTTTTTTGCTTTCACCTAATGAGTTGNAATTTGNCTTTTAATTNTNAATATTTATNGACAGNTACTTCTATCATTCCTTAAATGATATAATGNTATTACCCACACAGAAACCACTGATGGTACCGATATAAGCATTGNCTATCTAATNACATGTTTTACGCTCAATATN] [+] EMBL CD079897 [TTCGGCACGAGGGCCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCTTTTCCTACTAAAATTGCATTTATGATAAACACCTAGTGTTATGAATAACATTGAAATCTGCCGGTCACCTTTGAAATAGCATTCAGCATTATTATGTATTTATTTAGTATTTATATACAGGGATACGTGCTATTGTGCAGTTCCACTTTTCCAAGTGCTTAACTAATTACATAAAGTAAAATGGGATAAATGAATATTAAGAATAAATCTCAGTCAATGTTAGTTCCTGTGATTAATTAATTCTTCCAATCTTTTTTCTATGATAAAGCTCTTTTTTGTATTCTGTTTCACTGGATAACAAATCATTCATTTTTATACATACATGTGTGTTGGGTCGGTTTAAACGAAAACGTAGACCTTATTCAACATTCCACTTGTATGATGAAAAATGTGACAGAGTACGTTACATTGAGGGCGAACTNTNTTGTTTCTACTTCTTATGTCTTTTCACATGNCAACACGTTNTTTTACAAAGTTACTTTTTTGCTTTCACCTAATGAGTTGNAATTTGNCTTTTAATTNTNAATATTTATNGACAGNTACTTCTATCATTCCTTAAATGATATAATGNTATTACCCACACAGAAACCACTGATGGTACCGATATAAGCATTGNCTATCTAATNACATGTTTTACGCTCAATATN] consensusID : consensus_9188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 634 fasta sequence [CCAACACATGATCCTAAAATGAATATCACTGTTCATTTAACATCATCAGAGTGTTTAGATTATTTGGATAGATTACAAGCTGGAAAACAGTCACAATCACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCT] [+] EMBL CD078564 [CCAACACATGATCCTAAAATGAATATCACTGTTCATTTAACATCATCAGAGTGTTTAGATTATTTGGATAGATTACAAGCTGGAAAACAGTCACAATCACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTNTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCC CTAAACACATCGA ] [+] EMBL CD169768 [ ACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAATCCACTTTCTTCT] [+] EMBL CD169340 [ ACCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAA ] [-] EMBL CD169550 [ CCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTGAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ] [-] EMBL CD169681 [ CCATTATTACATCATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ] [-] EMBL CD169728 [ TAGTTTTAGTTCAGATGTTACCACAAATATTACTACTGCTGCTNCTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTNTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAGATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ] [-] EMBL CD169493 [ AGTTCAGATGTTACCACAAATATTACTACTACTGCTACTACTATAAGTACGGGTAGTAGTATTAAAAACAGTACTGCTTCTGATATATGCAATAAGAATAGTATCTACAAAGAAGATTTTGATCTAATGAATGAAGAATCCATGAGAATTGAAGAGGCTACATTAGAAACACCAGATATTGAAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTACAATATGACCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCGAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9188#0 TTCGGCACGAGGGCCGATTGTAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAA 60 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 ACGAACAGTCAATAAGTGTAAAGAAGACATTTTAAAGCTATTTCATCGAAATTTACAAAA 120 consensus_9188#1 ----CCAACACATGATCCTAAAATGAATATC-----ACTGTTCATTTAACATCATCAGAG 51 ** ** * **** * ** ** ** * * ** ** * consensus_9188#0 CAGTTAAAA-ATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACATGCATCT 179 consensus_9188#1 TGTTTAGATTATTTGGATAGATTACAAGCTGGAAAACAGTCACAATCACCATTATTACAT 111 *** * ** * * * *** ** * * * * ** *** * * * consensus_9188#0 GATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAAAACACATCG-AAAT 238 consensus_9188#1 CATAATCAAGCGGAGAATAAAGAATCAACGTCTAGTTTTAGTTCAGATGTTACCACAAAT 171 ***** * *** * ** * ** ** * * * * * * * **** consensus_9188#0 CCACTTTCTTCTTTTCCTACTAAAATTGCATTTATGATAAACACCTAGTGTTATGAATAA 298 consensus_9188#1 ATTACTACTACTGCTACTACTATAAGTACG-----GGTAG-----TAGTATTAAAAACAG 221 * ** ** * ****** ** * * * ** **** *** ** * consensus_9188#0 CATTGAAATCTGCCGGTCACCTTTGAAATAGCATTCAGCATTATTATGTATTTATTTAGT 358 consensus_9188#1 TACTGCT-TCTGATATATGCAATAAGAATAGTATCTACAA--AGAAGATTTTGATCTAAT 278 * ** **** * * ***** ** * * * * * ** ** ** * consensus_9188#0 ATTTATATACAGGGATACGTGCTATTGTGCAGTTCCACTTTTCCAAGTGCTTAACTAATT 418 consensus_9188#1 GAATG-----AAGAATCCATGAGAAT-TGAAGAGGCTACATTAGAAACACC-AGATATTG 331 * * * ** * ** * * ** ** * ** ** * * ** * consensus_9188#0 ACATAAA--GTAA-AATGGGATAAATGAATATTAAGAATAAATCTCAGT-CAATGTTAGT 474 consensus_9188#1 AAATGAACGGTGACAATGATATCAATAATAATGAGGAAGATATTGAAGAACAGTATTA-- 389 * ** ** ** * **** ** *** * ** * *** * ** ** ** * *** consensus_9188#0 TCCTGTGATTAATTAATTCTTCCAATCTTTTTTCTATGATAAAGCTCTTTTTTGTATTCT 534 consensus_9188#1 CAATATGACCGATTG--TAATGAAATTAGTTAACCATAATCGATTACTGAATTAAAAACG 447 * *** *** * * *** ** * ** ** * ** ** * * consensus_9188#0 GTT--TCACTGGATAACAAATCATTCATTTTTATACATACATGTGTGTTGGGTCGGTTTA 592 consensus_9188#1 AACAGTCAATAAGTG-TAAAGAAGACATTTTAAAGC---------TATTTCATCGAAATT 497 *** * * *** * ****** * * * ** *** * consensus_9188#0 AACGAAAACGTAGACCTTATTCA-ACATTCCACTTGTATG-ATGAAAAATGTGACAGAGT 650 consensus_9188#1 TACAAAACAGTTAAAAATATATACATATTCCATTTTCGTGTGTATTTACTGGCACAACAT 557 ** *** ** * *** * * ****** ** ** * * ** *** * consensus_9188#0 ACGTTACATTGAGGGCGAACTNTNTTGTTTCTACTTCTTATGTCTTTTCACATGNCAACA 710 consensus_9188#1 GCATCTGATAATGCACCGGTCTCTGTGTTATTACAGTTTACTAATTCCTAAA----AACA 613 * * ** * * **** *** *** ** * * **** consensus_9188#0 CGTTNTTTTACAAAGTTACTTTTTTGCTTTCACCTAATGAGTTGNAATTTGNCTTTTAAT 770 consensus_9188#1 CATCG------AAATCCACTTTCTTCT--------------------------------- 634 * * *** ***** ** consensus_9188#0 TNTNAATATTTATNGACAGNTACTTCTATCATTCCTTAAATGATATAATGNTATTACCCA 830 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 CACAGAAACCACTGATGGTACCGATATAAGCATTGNCTATCTAATNACATGTTTTACGCT 890 consensus_9188#1 ------------------------------------------------------------ consensus_9188#0 CAATATN 897 consensus_9188#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||