These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1182 fasta sequence [ATCGAGGAACTGCATAAACTCAGTATATGTCCTGGTTATGTTATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATATCGTCTAATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCATCGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT] [+] EMBL CD082094 [ATCGAGGAACTGCATAAACTCAGTATATGTCCTGGTTATGTTATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATATCGTCTAATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCATCGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAANGCAGCTNCAAAACTACTTGCTTATTT ] [+] EMBL CD082926 [ TGAATGGCGTAATCATCGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAAATAATGANCAAGATGGAG ] [-] EMBL CD076510 [ GTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT] [-] EMBL CD077002 [ ATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATGTAAATATATTTAT] [-] EMBL CD075709 [ GAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTTTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATTTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCCCCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT] [-] EMBL CD077133 [ AGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGGCTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT] [-] EMBL CD140897 [ TGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGCTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGA ] consensusID : consensus_9193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATTTAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATAT] [-] EMBL CD121289 [CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATTTAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9193#0 ------------------------------------------------------------ consensus_9193#1 CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATT 60 consensus_9193#0 --------ATCGAGGAACT------GCATAAACTCAGT-ATATGTCCTGGTTATGTTATG 45 consensus_9193#1 TAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATG 120 ** *** * ************* ***************** *** consensus_9193#0 GCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTT 105 consensus_9193#1 GCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTT 180 ************************************************************ consensus_9193#0 GAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTT 165 consensus_9193#1 GAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTT 240 ************************************************************ consensus_9193#0 TATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAA 225 consensus_9193#1 TATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAA 300 ************************************************************ consensus_9193#0 TTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGA 285 consensus_9193#1 TTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGA 360 ************************************************************ consensus_9193#0 CCCCTATATCGTCTAATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCAT 345 consensus_9193#1 CCCCTATAT--------------------------------------------------- 369 ********* consensus_9193#0 CGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATA 405 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 TGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTT 465 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 GGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATG 525 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 GAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCA 585 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 TGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCT 645 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 CCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTT 705 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 TTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAG 765 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 ACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTG 825 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 ATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAAT 885 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 CCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACC 945 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 ATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTA 1005 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 CTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATT 1065 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 ATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTA 1125 consensus_9193#1 ------------------------------------------------------------ consensus_9193#0 GAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT 1182 consensus_9193#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||