cluster # 9200

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Schistosoma mansoni
cluster # 9200 cluster # 9200 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9200#0 length = 539 sequences # 7

consensus_9200#1 length = 427 sequences # 1

consensusID : consensus_9200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 539
fasta sequence

                              [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT]

[+] EMBL CD070988             [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTCGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCAAATGCTTGAAATATTTTACCTGCTAGGAATCTACCGATAT]
[+] EMBL CD071007             [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATA ]
[+] EMBL CD098069             [AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATGAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAATGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCCGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTACACTTGTGATTTGATT                                                                                   ]
[-] EMBL CD097931             [                                                    ACTGTCTGTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGGGAGACTTTGGACATCAGCTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT]
[-] EMBL CD097948             [                                                           TTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGCGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT]
[-] EMBL CD097769             [                                                                                                      AGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGGAAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT]
[-] EMBL CD070951             [                                                                                                                                                                                                                GATTTTCCTACACAGCCTTCGTTCACTGAACTCATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATGGTGACTGTACTAAGGCTTCTAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATATTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATTACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACCTTGGACATCAGTTGGCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT]




>consensus_9200#0
AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTT
TACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTG
ATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGG
AAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACT
CATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTC
TAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATA
TTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATT
ACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTG
GCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT

consensusID : consensus_9200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCTAAATTAGGAAGTGAGAAACGATTTATGCTCGCTTATCATATAATCACTTGAGATTGAAAAAATATGTTCAATGAATTAATTGATTTATAAGACACAAAATCGGGGTTTTGTTTCGTTTGTATTTTGTAGATAACATAAAGTCATTTCCATACTGTTTTTTACGCGAACGTGCATCGAGAAAAGCGTGTTCTGTGTATGGAAGTGCTAATATGGCGATATAAGATATGCGGTCCATTGCCCTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACTCAAAACT]

[-] EMBL CD194312             [AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTATTGAACATAAACCATGACCTAAATTAGGAAGTGAGAAACGATTTATGCTCGCTTATCATATAATCACTTGAGATTGAAAAAATATGTTCAATGAATTAATTGATTTATAAGACACAAAATCGGGGTTTTGTTTCGTTTGTATTTTGTAGATAACATAAAGTCATTTCCATACTGTTTTTTACGCGAACGTGCATCGAGAAAAGCGTGTTCTGTGTATGGAAGTGCTAATATGGCGATATAAGATATGCGGTCCATTGCCCTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACTCAAAACT]




>consensus_9200#1
AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTTTACTGCAT
ATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTGATTGGTTA
TTGAACATAAACCATGACCTAAATTAGGAAGTGAGAAACGATTTATGCTCGCTTATCATA
TAATCACTTGAGATTGAAAAAATATGTTCAATGAATTAATTGATTTATAAGACACAAAAT
CGGGGTTTTGTTTCGTTTGTATTTTGTAGATAACATAAAGTCATTTCCATACTGTTTTTT
ACGCGAACGTGCATCGAGAAAAGCGTGTTCTGTGTATGGAAGTGCTAATATGGCGATATA
AGATATGCGGTCCATTGCCCTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACT
CAAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9200#0      AACTTGCAATCCTATTCCCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTT 60
consensus_9200#1      --------AACTCACTCNCCGTAAATCTTCTGGTTCAGGACATAATCGATAAACTGTCTT 52
                              * *  * ** ******************************************

consensus_9200#0      TACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTG 120
consensus_9200#1      TACTGCATATCGATAAAGGACTGTAGCGTCTGCTGTATGTTCAGTCATTTGTATAGTGTG 112
                      ************************************************************

consensus_9200#0      ATTGGTTATTGAACATAAACCATGACCCATATATTTTGAAGTCTGCACAGGGGCGTTAGG 180
consensus_9200#1      ATTGGTTATTGAACATAAACCATGACC--TAAATTAGGAAGT-----GAGAAACGATTTA 165
                      ***************************  ** ***  *****      **   ** *   

consensus_9200#0      AAGTCGTAAGTATAATTTGATGGTTAGTGATTTTCCTACACAGCCTTCGTTCACTGAACT 240
consensus_9200#1      TGCTCGCT--TATCATATAATCACTTGAGATT------GAAAAAATATGTTCAATGAATT 217
                         ***    *** ** * **   * * ****       * *   *  ***** **** *

consensus_9200#0      CATTTTGATATTTCGCATTCTAGAGCTCAATTCTTCGCATAGTGACTGTACTAAGGCTTC 300
consensus_9200#1      AAT--TGATTTATAAGACACAAAA--TCGGGGTTTTGTTTCGT--TTGTATT-----TTG 266
                       **  **** * *   *  * * *  **     ** *  * **   **** *     ** 

consensus_9200#0      TAATTCAGATCGTGAGCTTAGTCGAATTCCGTAGTTCATTGATGCTGATACAGATTTATA 360
consensus_9200#1      TAG---ATAACATAAAGTCATTTCCATACTGTTTTTTACGCGAACGTGCATCGAGAAAAG 323
                      **    * * * * *  * * *   ** * **  ** *      *    *  **   *  

consensus_9200#0      TTCCTTCTCGAATTGCAAACTATCCAAATCCTTTCCGCGACATGCCATGTAAACCCGATT 420
consensus_9200#1      CGTGTTCT-GTGTATGGAAGTGCTAATAT------GGCGATATAAGATATGCGGTCCATT 376
                          **** *  *    ** *    * **       **** **   ** *     * ***

consensus_9200#0      ACCAGTTTTCTTGCCCAGTAAACTTGTGATTTGATTGTGAGAGACTTTGGACATCAGTTG 480
consensus_9200#1      GCC--CTGCACTAGACATTAAATAATTAGATCAGTAGGACAAAACTCAAAACT------- 427
                       **   *    *   ** ****    *   *   * *    * ***    **        

consensus_9200#0      GCCGCATGTTTTGGCATCGAATGCTTGAAATATTTTACCTGCTAGGGATCTACCGATAT 539
consensus_9200#1      -----------------------------------------------------------