cluster # 9204

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Schistosoma mansoni
cluster # 9204 cluster # 9204 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9204#0 length = 619 sequences # 6

consensus_9204#1 length = 271 sequences # 1
consensus_9204#2 length = 150 sequences # 1

consensusID : consensus_9204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 619
fasta sequence

                              [TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGAATAAATATACATATATGTATTAGANAGCAATCCGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATATAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGAGARGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGTAACGTGTGGGGAATAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAGNAAAGAAACTATGAATATTCCGAANAAAAACAGATAGAACACACAGAAAATGAGTAATATAACTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTTTCTTATGTAATAAACCACCTA]

[+] EMBL AA999443             [TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AA999385             [         TAATTTGAGCAAA CTGTCTTAAAAGTGAAGACAGTAAAACNNGACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGANAATCCATAGAATAAAT    ATATATGTATTAGANAGCAATCCGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATATAAACAAA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD164387             [                                                                             CAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGAATAAATATACATA                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AA999654             [                                                                                                                          TAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGAATAAATATATATATATGTATTAGAAAGCAATCCGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATATAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGAGARGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGTAACGTGTGGGGAATAGGTTTAAA                                                                                                                                                                                  ]
[+] EMBL CD090878             [                                                                                                                                                                                                                                                                                                                                                                                             CTGTAAGCCATATATAAATATATAGCTTTTA GGGGTAACGTGTGGGGAGTAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAGNAAAGAAACTATGAATATTCCGAANAAAAACAGATAG                                                                                                        ]
[-] EMBL SMAA8307             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TAGGTTTAAATGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAG AAGGAAACTATGAATATTCCGAAAAAAAACAGATAGAACACACAGAAAATGAGTAATATAACTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTTTCTTATGTAATAAACCACCTA]




>consensus_9204#0
TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAG
AAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAG
ACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGA
ATAAATATACATATATGTATTAGANAGCAATCCGAACAAATTATTAAAAATATACTACTA
ACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAATA
TAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGAGA
RGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGTAA
CGTGTGGGGAATAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAGNA
AAGAAACTATGAATATTCCGAANAAAAACAGATAGAACACACAGAAAATGAGTAATATAA
CTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTTTC
TTATGTAATAAACCACCTA

consensusID : consensus_9204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TTGTATAANNNGNGCAAACTGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGAATAAATATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGG]

[+] EMBL AA999270             [TTGTATAANNNGNGCAAACTGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAGAAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAATTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGAATAAATATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTACTAACCAGTAAACATATTACAATTACATCAAATATGG]




>consensus_9204#1
TTGTATAANNNGNGCAAACTGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAGAAGAG
CACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAGACTAA
TTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGAATAAA
TATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTACTAACC
AGTAAACATATTACAATTACATCAAATATGG

consensusID : consensus_9204#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [TTGTATAATTTGAGCAAACTGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAGAAGAGCACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAGACTAATTCACATATATTCCAACTGCATATAGATAC]

[+] EMBL AA999269             [TTGTATAATTTGAGCAAACTGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAGAAGAGCACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAGACTAATTCACATATATTCCAACTGCATATAGATAC]




>consensus_9204#2
TTGTATAATTTGAGCAAACTGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAGAAGAG
CACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAGACTAA
TTCACATATATTCCAACTGCATATAGATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9204#0      TATTTGTATTAATTTGAGCAAACCTGTCTTAAAAGTGAAGATAGTAAAAAGGAACAACAG 60
consensus_9204#2      ---TTGTAT-AATTTGAGCAAAC-TGTCTTAAAAGTCAAGATAGTAAACCCCCACAACAG 55
consensus_9204#1      ---TTGTAT-AANNNGNGCAAAC-TGTCTTAAAAGTGAAGATAGTAAAGCCCNACAACAG 55
                         ****** **   * ****** ************ ***********     *******

consensus_9204#0      AAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAG 120
consensus_9204#2      AAGAGCACTAAATTANACACATATCAGTGGATACAACAAGAACACATGACAATNAAAGAG 115
consensus_9204#1      AAGAGCACTAAATTAAACAAATATCAGTGGATACAACAAGAACACATGAAAATAAAAGAG 115
                      *************** *** ***************************** *** ******

consensus_9204#0      ACTAATTAACATATATTCCAACTGCATATAGATACAAATGGAAATATGAAAATCCATAGA 180
consensus_9204#2      ACTAATTCACATATATTCCAACTGCATATAGATAC------------------------- 150
consensus_9204#1      ACTAATTAACATATATTCCAACTGCATATAGATACACATGGAAATATGACANTCCATAGA 175
                      ******* ***************************                         

consensus_9204#0      ATAAATATACAT-ATATGTATTAGANAGCAATCCG-AACAAATTATTAAAAATATACTAC 238
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      ATAAATATATATGATAAATACTANAGAGCAATCCGGAACAAATTATTAAAAATATACTAC 235
                                                                                  

consensus_9204#0      TAACCAGTAAACATATTACAATTACATCAAATATGGTAATATAATAAACTAACACACAAA 298
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      TAACCAGTAAACATATTACAATTACATCAAATATGG------------------------ 271
                                                                                  

consensus_9204#0      TATAAACAAATAATGGGAAAAAACGAATAGGACAAAATATCATAAATATTATAACTGAGA 358
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      ------------------------------------------------------------
                                                                                  

consensus_9204#0      GARGCCATTTTCATAACCCATGTCTGTAAGCCATATATAAATATATAGCTTTTAGGGGGT 418
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      ------------------------------------------------------------
                                                                                  

consensus_9204#0      AACGTGTGGGGAATAGGTTTAAACGTAGCAGTCATTAGAATGTGACTAGTATATCTGAAG 478
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      ------------------------------------------------------------
                                                                                  

consensus_9204#0      NAAAGAAACTATGAATATTCCGAANAAAAACAGATAGAACACACAGAAAATGAGTAATAT 538
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      ------------------------------------------------------------
                                                                                  

consensus_9204#0      AACTAAAATTTAATATAGAATAAAGCTGTTGATTGAGTGCATATTTTTGTGTTTATTTTT 598
consensus_9204#2      ------------------------------------------------------------
consensus_9204#1      ------------------------------------------------------------
                                                                                  

consensus_9204#0      TCTTATGTAATAAACCACCTA 619
consensus_9204#2      ---------------------
consensus_9204#1      ---------------------