These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCTGAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACATCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAATAAGCATAATAAAACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAAATATCCTGACTTAGTATGTGAAGAAACAGCTAATCAACTTGTAATTTGGTGTATTGATTTAGCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACATCAGTGTATAGTGATGCAATTTATGCTTGAAATTAGCAAATCACTAAAAAGTTGATCCAAGAGCGTGTATTCGACCATTCTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAATCTTGACTCANCATCAA] [+] EMBL CD144289 [TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCTGAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACATCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAATAAGCATAATAAAACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAAATATCCTGACTTAGTATGTGAAGAAACAGCTAATCAACTTGTAATTTGGTGTATTGATTTAGCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACATCAGTGTATAGTGATGCAATTTATGCTTGAAATTAGCAAATCACTAAAAAGTTGATCCAAGAGCGTGTATTCGACCATTCTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAATCTTGACTCANCATCAA] consensusID : consensus_9206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 460 fasta sequence [ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCAAGTCGACCAGATTGCATCCCTAACTGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAACAGGCCGAGATCAGATTCGTGTCGGTCCATC--CGGA-GGCTGATTACTTTGCTGCTTTGTGTGCTACGGTGCGCGTTGTGGTGAGGTTACTGCACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCACCAAGCGCGGGTAAACGGCGG] [+] EMBL CD193250 [ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCAAGTCGACCAGATTGCATCCCTAACTGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAACAGGCCGAGATCAGATTCGTGTCGGTCCATC CGGA GGCTGATTACTTTGCTGCTTTGTGTGCTACGGTGCGCGTTGTGGTGAGGTTACTGCACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCACCAAGCGCGGGTAAACGGCGG] [+] EMBL BG931980 [ gatggtaCGGT GATCGACGGAGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTTACTGGACTCTGATCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCGGTGCTCTGAATGTCAAAGTGA ] consensusID : consensus_9206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 381 fasta sequence [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCTCATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGCTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGACATTGTTGTTTGTCCGCG] [+] EMBL CD162480 [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCTCATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGCTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGANACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACA ] [-] EMBL CD184134 [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACACAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGT ] [+] EMBL CD184783 [ GCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGACATTGTTGTTTGTCCGCG] consensusID : consensus_9206#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTCCCTGATTCTGTGCTGACTGAACTAACCATAAGACACCCTCATAACCATTTGACGGATGCACCGCCCCTCTCATAACTCCCTCGCCATGACATGGTCTTGATAAATGATCGCACACCACATCAAGACTCAAACACCACAATTCGCACCACGACTCATCTGACATGAACAATATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCATTCCCGTTTCACTGAATAACTAAAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTGGACA] [+] EMBL CD194642 [TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTCCCTGATTCTGTGCTGACTGAACTAACCATAAGACACCCTCATAACCATTTGACGGATGCACCGCCCCTCTCATAACTCCCTCGCCATGACATGGTCTTGATAAATGATCGCACACCACATCAAGACTCAAACACCACAATTCGCACCACGACTCATCTGACATGAACAATATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCATTCCCGTTTCACTGAATAACTAAAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTGGACA] consensusID : consensus_9206#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [CCTCTTCCGGCACACGGGGGTTGGGTTATATGCTGCTTTGCGCACTTCATTGCACCTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCG] [+] EMBL CD092627 [CCTCTTCCGGCACACGGGGGTTGGGTTATATGCTGCTTTGCGCACTTCATTGCACCTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9206#1 ------------------------ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCA 36 consensus_9206#4 ------------------------------------------------------------ consensus_9206#3 ------------------------------------------------------------ consensus_9206#0 TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCT 60 consensus_9206#2 ------------------------------------------------------------ consensus_9206#1 AGTCGACCAGATTGCATCCCTAACTGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAA 96 consensus_9206#4 ------------------------------------------------------------ consensus_9206#3 ------------------------------------------------------------ consensus_9206#0 GAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCG 120 consensus_9206#2 -----------------------------------------CCCGCCGTTTACCCGCGCT 19 consensus_9206#1 CAGGCCGAGATCAGATTCGTGTCGGTCCATCCGGAGGCTGATTACTTTGCTGCTTTGTGT 156 consensus_9206#4 ---------------CCTCTTCCGGCACA--CGGGGGTTGGGTTATATGCTGCTTTGCGC 43 consensus_9206#3 -----------------TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTC 43 consensus_9206#0 AAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACA 180 consensus_9206#2 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCTCATTGCGTCAAAA 79 * consensus_9206#1 GCT---ACGGTGCGCGTTGTGGTGA---GGTTACTGCACTCTGACC--CGGGT-CGATCG 207 consensus_9206#4 ACT---TCATTGCACCTTGTGGTGA---GGTTACTGGACTCTGACC--CGGGT-CGATCG 94 consensus_9206#3 CCTGATTCTGTGCTGACTGAACTAA---CCATAAGACACCCTCATAA-CCATT-TGACGG 98 consensus_9206#0 TCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAA-TAAGCATAATAA 239 consensus_9206#2 CCAA--TCAGTGGACATCGCAATGC----TTTGTTTTAATTAGACAGTCGGATTCCCCTG 133 * * * * * * consensus_9206#1 ---TGGGCGG---TTT---CAGCTGTTAGTGTCGTGCAGCTAGCAACGC---GCGAGGAC 255 consensus_9206#4 ---TGGGCGG---TTT---CAGCTGTTAGTGTCGTGCAGCTAGCAACGC---GCGAGGAC 142 consensus_9206#3 A--TGCACCG---CCC---CTCTCATAACTCCCTCGCCA-TGACATGGT---CTTGATAA 146 consensus_9206#0 AACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAA 299 consensus_9206#2 GTCCGTGCCA---GCT---CTGAGTTAGCCGTCGCGCGCCAGACCATGG---AAGTACAG 184 * * * * * consensus_9206#1 ATGTTC-CACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTC 314 consensus_9206#4 ATGTTC-CACGTTGCGTCAAGCG------------------------------------- 164 consensus_9206#3 ATGATCGCACACCACATCAAG--ACTCAAACACCACAATTCGCACCACGACTCATCTGAC 204 consensus_9206#0 ATATCCTGACTTAGTATGTGAAGAAACAGCTAAT-CAACTTGTAATTTGGTGTAT-TGAT 357 consensus_9206#2 CCGCTT-GACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGC 243 ** * consensus_9206#1 AGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACA--A-AGCATTGCGATG 371 consensus_9206#4 ------------------------------------------------------------ consensus_9206#3 ATGAACAATATATCGAAGCACGCAGCGATAGACCACGCACCCCG--A-AATGTGCTTTGA 261 consensus_9206#0 TTAGCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACA--TCAGTGTATAGTGA 415 consensus_9206#2 TGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGA 303 consensus_9206#1 TCCACTGATTGGTTTTG-ACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGA 430 consensus_9206#4 ------------------------------------------------------------ consensus_9206#3 ACCAAAATACAATTTCA-TTCCCGTTTCACTG--AATAACTAAAGAAACAATGATAGCAG 318 consensus_9206#0 TGCAATTTATGCTTGAAATTAGCAAATCACTA--AAAAGTTGATCCAAGAGCGTGTATTC 473 consensus_9206#2 AGCACACAAAGCAGCAAAGAAACCAGCCCCCA--ACTGGACCGACACGTATCTGATCTCG 361 consensus_9206#1 AGAAATTCACCAAGCGCGGGTAAACGGCGG------------------------------ 460 consensus_9206#4 ------------------------------------------------------------ consensus_9206#3 TGGTATTTCATTTGCGCTGGACA------------------------------------- 341 consensus_9206#0 GACCATTCTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAA 533 consensus_9206#2 GACATTGTTGTTTGTCCGCG---------------------------------------- 381 consensus_9206#1 ----------------- consensus_9206#4 ----------------- consensus_9206#3 ----------------- consensus_9206#0 TCTTGACTCANCATCAA 550 consensus_9206#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||