These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 720 fasta sequence [AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTGTCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCATTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG----CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAA-----GCGTAACGTATTCATTCAACCG] [-] EMBL CD091437 [AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTGTCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCATTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTTTAGAACATCAAGGAGGAGGCTTTTTTTGAACTT ] [+] EMBL CD178853 [ GTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAGTCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTTGAAACTGATACTGTCTGTAAA GCGTAACGTATTCATTCAACC ] [+] EMBL CD179186 [ GTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGGGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTAGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCCTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTG AACACACGTTCAGGCAGACCGTCTTAAACGCTTTG AAACTGATACTGTCTGTAAA GCGTAACGTATTCATTCAACC ] [-] EMBL CD133505 [ GATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAA GCGTAACGTATTCATTCAACCG] [-] EMBL CD179472 [ CGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCCTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTATTCATTCAACCG] consensusID : consensus_9207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 483 fasta sequence [TAATTTCAGATGTTAAAAGTCTATAGCTACAAAGATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTCCTCGTGCCGAATTNCTGGCCTCGA] [-] EMBL CD079315 [TAATTTCAGATGTTAAAAGTCTATAGCTACAAAGATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTCCTCGTGCCGAATTNCTGGCCTCGA] [-] EMBL CD084182 [TAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCA AGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAAgcg ] consensusID : consensus_9207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTGATACGTCCTTATATCAGTTGATACAGGTAAATCCAAAGATGGGAACGAAACAGGACACACTAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT] [+] EMBL CD097959 [ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTGATACGTCCTTATATCAGTTGATACAGGTAAATCCAAAGATGGGAACGAAACAGGACACACTAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9207#0 AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTG 60 consensus_9207#1 ------------------------------------------------------------ consensus_9207#2 ------------------------------------------------------------ consensus_9207#0 TCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCA 120 consensus_9207#1 ------------------------------------------------------------ consensus_9207#2 ------------------------------------------------------------ consensus_9207#0 TTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGT 180 consensus_9207#1 ------------------------------------------------------------ consensus_9207#2 ------------------------------------------------------------ consensus_9207#0 CTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAA 240 consensus_9207#1 ------------------------------------------------------------ consensus_9207#2 ------------------------------------------------------------ consensus_9207#0 AACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTA-TAGCTACAAACATTA 299 consensus_9207#1 ---------------------TAATTTCAGATGTTAAAAGTCTA-TAGCTACAAAGATTA 38 consensus_9207#2 ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTG 60 **** * ** * * * * * ** ** consensus_9207#0 ACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCG 359 consensus_9207#1 ACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCG 98 consensus_9207#2 ATACGTCCTTATATCAGT-TGATACAGGTAAATCCAAAGATGGGAACG--AAACAGGACA 117 * * * * * * * * * ** ** ** ** * * *** * consensus_9207#0 CGATGAGTCTAGAACATCAAGGAGGAGG---CTTCTTCTGAACTTCGGACATACCTTTGC 416 consensus_9207#1 CGATGAGTCTAGAACATCAAGGAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGC 158 consensus_9207#2 CACTAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGC 177 * * * * * * * ** * * *** * * ** ****** consensus_9207#0 GAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATG 476 consensus_9207#1 GAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATG 218 consensus_9207#2 GAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATG 237 ************************************************************ consensus_9207#0 TATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATC 536 consensus_9207#1 TATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATC 278 consensus_9207#2 TATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATC 297 ************************************************************ consensus_9207#0 TCATAGGTTTACTATCTGCT----TTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTA 592 consensus_9207#1 TCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTA 338 consensus_9207#2 TCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTA 357 ******************** ************************************ consensus_9207#0 GTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTT 652 consensus_9207#1 GTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTT 398 consensus_9207#2 GTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTT 417 ************************************************************ consensus_9207#0 CAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAA-----GCGTAACGT 707 consensus_9207#1 CAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT 458 consensus_9207#2 CAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT 477 ********************************************** ********* consensus_9207#0 ATTCATTC--AACCG---------- 720 consensus_9207#1 CCTCGTGCCGAATTNCTGGCCTCGA 483 consensus_9207#2 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||