These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 728 fasta sequence [TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCGCAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGANCATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGA] [+] EMBL CD178560 [TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTCACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATA ] [-] EMBL CD201531 [TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCGCAGTCTCGGCAACT ] [+] EMBL CD178598 [TTGGATAATGGACGCGGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGGAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACC ] [-] EMBL CD190173 [ ATTTAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACGGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAG ] [+] EMBL CD079448 [ TAAAGATGCTGCTCGAATGATTAACTGATGGAAATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCGCAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGANCATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGA] [+] EMBL CD135916 [ TAGGAGATCTGAAGAAACAATTTATTTCCTGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCTGAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGTTTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTAATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGA ] [+] EMBL CD155683 [ CTAGAGGAAATCTTAAAAATCATACCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAAGGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTGGACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGATGCATTTGTGACCGTTCTTGTTTACCGA ] consensusID : consensus_9208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [ATTATGGGTCATTTTTAGCGACTTTTTAAGTCTCGGCAACTAGTCATCACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTAAGTGTTCACCCTGTGTAAGCAGTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGACAATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGAAGGCACTTTTTATGATGATCTACGAAACCCAAGTAGCAAGAGCCTTGGGGAGTAAGTTACTTTGTTTACTTACTTTATACCCTAGA] [-] EMBL CD187113 [ATTATGGGTCATTTTTAGCGACTTTTTAAGTCTCGGCAACTAGTCATCACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACAGTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTAAGTGTTCACCCTGTGTAAGCAGTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGACAATCCCGAGCTGCGTGTTTCGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGAAGGCACTTTTTATGATGATCTACGAAACCCAAGTAGCAAGAGCCTTGGGGAGTAAGTTACTTTGTTTACTTACTTTATACCCTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9208#0 TTGGATAATGGACGCAGAGGCGCAATTTAAAGATGCTGCTCGAATGATTAACTGATGGAA 60 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 ATTATCAGCATTGATTCGCCGAAGTTCCGAATAGGAGATCTGAAGAAACAATTTATTTCC 120 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TGTTTACCCAATGAGCATAAAATATTAAAGGAAAACGAAGCTAATGATCTTATTACGTCT 180 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 GAGTTTAAAAAGATCGTAACTGATTCTTCATTATTCGAACAGCTTGAGAGTGATTGCAGT 240 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 TTGGAAAATTTATATTTCGATGGGGAGTACACGACCCTAGAGGAAATCTTAAAAATCATA 300 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 CCGTCGAGGAAAGATGAAAAGCAGCTAAAGACTCTGACTCATTTACTGAAAGAAACTGAA 360 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 GGTTTGAATTCTAGGACATCAGTCCTCACAGCAACGCAAAGAAATCCTCGACCACTTGTG 420 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 GACACGTCTTACCGAAATTCTGTTGATGAATCTCCAGAGGCCACAGAAGTCATCCAGGAT 480 consensus_9208#1 ------------------------------------------------------------ consensus_9208#0 GCATTTGTGACCGTTCTTGTTTACCGACCATTTTGCCTTCCTAGCATCGATCCCTGTGCG 540 consensus_9208#1 -----------------------------ATTATGGGTCATTTTTAGCGACTTTTT---- 27 *** ** * * * *** * consensus_9208#0 CAGTCTCGGCAACTAGTCATTACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACA 600 consensus_9208#1 AAGTCTCGGCAACTAGTCATCACTCAGAGGTTGGTGCTGTTATCCAAACAAAATCTCACA 87 ******************* *************************************** consensus_9208#0 GTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGT---------------------- 638 consensus_9208#1 GTCCTAAGGGAAGCCATAAAATGTTCACAAGATAAGGTAAGTGTTCACCCTGTGTAAGCA 147 ************************************** consensus_9208#0 ----------TTGGCTAGGAGACTGTAGTGAGGCCCTTGANCATCCCGAGCTGCGTGTTT 688 consensus_9208#1 GTTTTCAGGTTTGGCTAGGAGACTGTAGTGAGGCCCTTGACAATCCCGAGCTGCGTGTTT 207 ****************************** ****************** consensus_9208#0 CGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGA-------------------- 728 consensus_9208#1 CGGCGGATCGAATTTACCCTTCATCATATTTTTTCATTGAAGGCACTTTTTATGATGATC 267 **************************************** consensus_9208#0 ------------------------------------------------------------ consensus_9208#1 TACGAAACCCAAGTAGCAAGAGCCTTGGGGAGTAAGTTACTTTGTTTACTTACTTTATAC 327 consensus_9208#0 ------ consensus_9208#1 CCTAGA 333 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||