These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 694 fasta sequence [AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTTGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGCTGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAAGATTTCTTACCTCATTCACTGCCGACTATGATGGACTTAGCA] [+] EMBL CD096333 [AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTTGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGA ] [-] EMBL CD193000 [ CTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGNACGTAAAAGTTTCTGCCTTGTCGCTGAGGANAATCTTCANAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGCTGCTCGAATAATTTC ] [+] EMBL CD197696 [ CAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGCTGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAAGATTTCTTACCTCATTCACTGCCGACTATGATGGACTTAGCA] [+] EMBL CD077602 [ GAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCANAATGTGTCCAATCATATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACAC ] consensusID : consensus_9209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [TTATCTCAGAATATATGATTACGAGAATATGTCTTGCCTAGAAACTGTACACGTTGGTTGGCGTGCTGGTGGGGGTCTGGACGATATGGCTGTTGCTCCTAGTTTCAATCAACTTGTCGGTGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTTGTATACCATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTGCACAGTCAACTCAGTTGATTACCACCGGTGTGAATACATCAGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTCGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTAATGCNNNNNTTTC] [+] EMBL CD117644 [TTATCTCAGAATATATGATTACGAGAATATGTCTTGCCTAGAAACTGTACACGTTGGTTGGCGTGCTGGTGGGGGTCTGGACGATATGGCTGTTGCTCCTAGTTTCAATCAACTTGTCGGTGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTTGTATACCATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTGCACAGTCAACTCAGTTGATTACCACCGGTGTGAATACATCAGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTCGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTAATGCNNNNNTTTC] consensusID : consensus_9209#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 376 fasta sequence [CACTTCAGCTTGCATGTCCAGAAGACCGTCAGTCAGACTACTATCTCACAATCTGCGTCGAATAATGTCCGGATTGCTCCAGGCCCACCGGAAGCAATTGAAGTGGAAGAGTTCTACCTGCATTCACTGCCGACTATGATGGAC-TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCAA] [-] EMBL CD157250 [CACTTCAGCTTGCATGTCCAGAAGACCGTCAGTCAGACTACTATCTCACAATCTGCGTCGAATAATGTCCGGATTGCTCCAGGCCCACCGGAAGCAATTGAAGTGGAAGAGTTCTACCTGCATTCACTGCCGACTATGATGGACTTTAGCATTGAATCCAGTTCTTCTAAATATGAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCAA] [+] EMBL CD192418 [ CTATGATGGAC TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGC ] [+] EMBL CD192701 [ CTATGATGGAC TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGC ] [-] EMBL CD192761 [ TATGATGGAC TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9209#0 AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACA 60 consensus_9209#1 --TTATCTCAGAATATA-TGATTACGAGAATA-TGTCTTGCCTAGAAACTGTACACGTTG 56 consensus_9209#2 -----------------------------------------------------CACTTCA 7 ** consensus_9209#0 GATA-TGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTC 119 consensus_9209#1 GTTGGCGTGCTGGTGGGGGTCTGGACGAT-ATGGCTGTTGCTCCTAGTTTCAATCAACTT 115 consensus_9209#2 GCTTGCATGTC--CAGAAGACC-GTCAGTCAGACTACTATCTCACAATCTGCGTCGAATA 64 * * ** * * * * * * * * * * * consensus_9209#0 GCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTA--TAGGACGTAAAAGTT---TCTG 174 consensus_9209#1 GTCG--GTGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTT 173 consensus_9209#2 ATGT---CCGGATTGCTCCAGGCCCACCGGAAGCAAT---TGAAGTGGAAGAG---TTCT 115 * ** * * * ** * * * consensus_9209#0 CCTTGTCGCTGAGGA-AAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATG 233 consensus_9209#1 GTATACCATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTG 233 consensus_9209#2 ACCTG-CATTCACTGCCGACTATGATGGACTTAGCATTGAATCCAGTTCTTCAAAATATA 174 * * * * * * ** ** * * consensus_9209#0 CACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAA 293 consensus_9209#1 CACAGTCAACTCAGTTGATTACCACCGGTGTGAATACAT---------CAGCTAATTACA 284 consensus_9209#2 AAAAATCAGA-CACATGATAA--ATCTGGGAGCCTTCAT----------GAACCATCAGA 221 * * * * * * * * ** ** * consensus_9209#0 ATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTT 353 consensus_9209#1 ATCATAATGACAATAGTAACAG--TATTCCTACTAT-CCATTCTGTACAACAGA-----T 336 consensus_9209#2 AGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATC 281 * * * * ** ** * consensus_9209#0 CTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAA 413 consensus_9209#1 ATGTGGTAATAGTAAT--CTTGTCAATTATATG---CAAAGTAATGAACGTCC-ATTTAC 390 consensus_9209#2 ACGTGTTAAAGG------CTTGTCAACTGTTCGTG-TGATGTGGAGTCCAGATAGTGTGA 334 *** * *** * * * * * consensus_9209#0 CCACAAAGCTAAA-TTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACC 472 consensus_9209#1 TCGCTGTGGTTCA-TCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCC 449 consensus_9209#2 AAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCAA------------------ 376 * * * * * * * * consensus_9209#0 CGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCA 532 consensus_9209#1 TCGTCGCTGAGGAAAATCT--TCAAA-ATGTTATGAGTGAGGATC----CTGACGATCCT 502 consensus_9209#2 ------------------------------------------------------------ consensus_9209#0 TTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATC 592 consensus_9209#1 GATGCACATTTACCTAATGCNNNNNTTTC------------------------------- 531 consensus_9209#2 ------------------------------------------------------------ consensus_9209#0 TCACAAGCTGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAA 652 consensus_9209#1 ------------------------------------------------------------ consensus_9209#2 ------------------------------------------------------------ consensus_9209#0 GATTTCTTACCTCATTCACTGCCGACTATGATGGACTTAGCA 694 consensus_9209#1 ------------------------------------------ consensus_9209#2 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||