cluster # 9209

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Schistosoma mansoni
cluster # 9209 cluster # 9209 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9209#0 length = 694 sequences # 4

consensus_9209#1 length = 531 sequences # 1
consensus_9209#2 length = 376 sequences # 4

consensusID : consensus_9209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 694
fasta sequence

                              [AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTTGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGCTGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAAGATTTCTTACCTCATTCACTGCCGACTATGATGGACTTAGCA]

[+] EMBL CD096333             [AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTTGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGA                                                                                                                                                                         ]
[-] EMBL CD193000             [                                                                                                                        CTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGNACGTAAAAGTTTCTGCCTTGTCGCTGAGGANAATCTTCANAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGCTGCTCGAATAATTTC                                                                               ]
[+] EMBL CD197696             [                                                                                                                                                                                                                                                       CAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGCTGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAAGATTTCTTACCTCATTCACTGCCGACTATGATGGACTTAGCA]
[+] EMBL CD077602             [                                                                                                                                                                                                                                                                   GAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAAGCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGCANAATGTGTCCAATCATATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACAC                                                                                                                                                           ]




>consensus_9209#0
AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACA
GATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCG
CTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTTGT
CGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTT
ACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAAATGATCC
AGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTTCTCAAGT
AAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAACCACAAA
GCTAAATTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACCCGTGAAGC
AAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCATTTACACC
TCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATCTCACAAGC
TGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAAGATTTCTT
ACCTCATTCACTGCCGACTATGATGGACTTAGCA

consensusID : consensus_9209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [TTATCTCAGAATATATGATTACGAGAATATGTCTTGCCTAGAAACTGTACACGTTGGTTGGCGTGCTGGTGGGGGTCTGGACGATATGGCTGTTGCTCCTAGTTTCAATCAACTTGTCGGTGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTTGTATACCATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTGCACAGTCAACTCAGTTGATTACCACCGGTGTGAATACATCAGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTCGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTAATGCNNNNNTTTC]

[+] EMBL CD117644             [TTATCTCAGAATATATGATTACGAGAATATGTCTTGCCTAGAAACTGTACACGTTGGTTGGCGTGCTGGTGGGGGTCTGGACGATATGGCTGTTGCTCCTAGTTTCAATCAACTTGTCGGTGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTTGTATACCATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTGCACAGTCAACTCAGTTGATTACCACCGGTGTGAATACATCAGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCCTCGTCGCTGAGGAAAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATGCACATTTACCTAATGCNNNNNTTTC]




>consensus_9209#1
TTATCTCAGAATATATGATTACGAGAATATGTCTTGCCTAGAAACTGTACACGTTGGTTG
GCGTGCTGGTGGGGGTCTGGACGATATGGCTGTTGCTCCTAGTTTCAATCAACTTGTCGG
TGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTTGTATACC
ATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTGCACAGTC
AACTCAGTTGATTACCACCGGTGTGAATACATCAGCTAATTACAATCATAATGACAATAG
TAACAGTATTCCTACTATCCATTCTGTACAACAGATATGTGGTAATAGTAATCTTGTCAA
TTATATGCAAAGTAATGAACGTCCATTTACTCGCTGTGGTTCATCTGCATCAAAAGTTTT
AAGTTCTATAGGACGTAAAAGTTTCTGCCTCGTCGCTGAGGAAAATCTTCAAAATGTTAT
GAGTGAGGATCCTGACGATCCTGATGCACATTTACCTAATGCNNNNNTTTC

consensusID : consensus_9209#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 376
fasta sequence

                              [CACTTCAGCTTGCATGTCCAGAAGACCGTCAGTCAGACTACTATCTCACAATCTGCGTCGAATAATGTCCGGATTGCTCCAGGCCCACCGGAAGCAATTGAAGTGGAAGAGTTCTACCTGCATTCACTGCCGACTATGATGGAC-TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCAA]

[-] EMBL CD157250             [CACTTCAGCTTGCATGTCCAGAAGACCGTCAGTCAGACTACTATCTCACAATCTGCGTCGAATAATGTCCGGATTGCTCCAGGCCCACCGGAAGCAATTGAAGTGGAAGAGTTCTACCTGCATTCACTGCCGACTATGATGGACTTTAGCATTGAATCCAGTTCTTCTAAATATGAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCAA]
[+] EMBL CD192418             [                                                                                                                                     CTATGATGGAC TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGC  ]
[+] EMBL CD192701             [                                                                                                                                     CTATGATGGAC TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGC  ]
[-] EMBL CD192761             [                                                                                                                                      TATGATGGAC TTAGCATTGAATCCAGTTCTTCAAAATATAAAAAATCAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCAACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCA ]




>consensus_9209#2
CACTTCAGCTTGCATGTCCAGAAGACCGTCAGTCAGACTACTATCTCACAATCTGCGTCG
AATAATGTCCGGATTGCTCCAGGCCCACCGGAAGCAATTGAAGTGGAAGAGTTCTACCTG
CATTCACTGCCGACTATGATGGACTTAGCATTGAATCCAGTTCTTCAAAATATAAAAAAT
CAGACACATGATAAATCTGGGAGCCTTCATGAACCATCAGAAGCAGAATTGTTATTGCGA
ATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATCACGTGTTAAAGGCTTGTCA
ACTGTTCGTGTGATGTGGAGTCCAGATAGTGTGAAAACAGCTGTTGAGTCTGCATTAATG
ATGAATGATACCGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9209#0      AGCTAATTACAATCATAATGACAATAGTAACAGTATTCCTACTATCCATTCTGTACAACA 60
consensus_9209#1      --TTATCTCAGAATATA-TGATTACGAGAATA-TGTCTTGCCTAGAAACTGTACACGTTG 56
consensus_9209#2      -----------------------------------------------------CACTTCA 7
                                                                            **    

consensus_9209#0      GATA-TGTGGTAATAGTAATCTTGTCAATTATATGCAAAGTAATGAACGTCCATTTACTC 119
consensus_9209#1      GTTGGCGTGCTGGTGGGGGTCTGGACGAT-ATGGCTGTTGCTCCTAGTTTCAATCAACTT 115
consensus_9209#2      GCTTGCATGTC--CAGAAGACC-GTCAGTCAGACTACTATCTCACAATCTGCGTCGAATA 64
                      * *    **      *    *  * *  * *              *   *   *  * * 

consensus_9209#0      GCTGTGGTTCATCTGCATCAAAAGTTTTAAGTTCTA--TAGGACGTAAAAGTT---TCTG 174
consensus_9209#1      GTCG--GTGTGTGTATCTCAAATTCACTAATTACTACTTATGTTGTGGATGTGAAGTCTT 173
consensus_9209#2      ATGT---CCGGATTGCTCCAGGCCCACCGGAAGCAAT---TGAAGTGGAAGAG---TTCT 115
                                   *    **             * *     *  **  * *     *   

consensus_9209#0      CCTTGTCGCTGAGGA-AAATCTTCAAAATGTTATGAGTGAGGATCCTGACGATCCTGATG 233
consensus_9209#1      GTATACCATTCACCACAAATTATTCAGATAATATTGTCGAGTCAAATAAGGACGTCTGTG 233
consensus_9209#2      ACCTG-CATTCACTGCCGACTATGATGGACTTAGCATTGAATCCAGTTCTTCAAAATATA 174
                         *  *  * *      *   *        **     **      *           * 

consensus_9209#0      CACATTTACCTTATCAACCTACAACTGAGGATAGCGAATCGCTCAATGCAGCTGATATAA 293
consensus_9209#1      CACAGTCAACTCAGTTGATTACCACCGGTGTGAATACAT---------CAGCTAATTACA 284
consensus_9209#2      AAAAATCAGA-CACATGATAA--ATCTGGGAGCCTTCAT----------GAACCATCAGA 221
                       * * * *    *       *  *     *       **               **   *

consensus_9209#0      ATGATCCAGTTGAATATGATAGGATATTTAAACCACACCACACAGTCCCACGTAGTCCTT 353
consensus_9209#1      ATCATAATGACAATAGTAACAG--TATTCCTACTAT-CCATTCTGTACAACAGA-----T 336
consensus_9209#2      AGCAGAATTGTTATTGCGAATTCGTAAACCTCATGATCCTTTCGTGAAAGTTATGTCATC 281
                      *  *        *     *     **           **   *                 

consensus_9209#0      CTCAAGTAAGGGCTATAACTTCTAGAAGAAATGTTTCAAATGAATATGCAACTGACCCAA 413
consensus_9209#1      ATGTGGTAATAGTAAT--CTTGTCAATTATATG---CAAAGTAATGAACGTCC-ATTTAC 390
consensus_9209#2      ACGTGTTAAAGG------CTTGTCAACTGTTCGTG-TGATGTGGAGTCCAGATAGTGTGA 334
                            ***  *      *** *  *      *     *         *           

consensus_9209#0      CCACAAAGCTAAA-TTTCAGTCTCCCTCCTTCATCACCAAACATTGTGAATCCCACAACC 472
consensus_9209#1      TCGCTGTGGTTCA-TCTGCATCAAAAGTTTTAAGTTCTATAGGACGTAAAAGTTTCTGCC 449
consensus_9209#2      AAACAGCTGTTGAGTCTGCATTAATGATGAATGATACCGCAA------------------ 376
                         *     *  * * *   *               *   *                   

consensus_9209#0      CGTGAAGCAAAATGTGTCCAATCAAATATCCTATCAGACAGATTCACTTCGGATAAACCA 532
consensus_9209#1      TCGTCGCTGAGGAAAATCT--TCAAA-ATGTTATGAGTGAGGATC----CTGACGATCCT 502
consensus_9209#2      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TTTACACCTCCGAGTACCACTTCAGCTTGCATGTCCAGAAGACCTCATCAGACTACTATC 592
consensus_9209#1      GATGCACATTTACCTAATGCNNNNNTTTC------------------------------- 531
consensus_9209#2      ------------------------------------------------------------
                                                                                  

consensus_9209#0      TCACAAGCTGCTCGAATAATTTCCGATTCTCCATGCCCACCGGAAGCAATTGAAGTGGAA 652
consensus_9209#1      ------------------------------------------------------------
consensus_9209#2      ------------------------------------------------------------
                                                                                  

consensus_9209#0      GATTTCTTACCTCATTCACTGCCGACTATGATGGACTTAGCA 694
consensus_9209#1      ------------------------------------------
consensus_9209#2      ------------------------------------------