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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1428 fasta sequence
[ACTGGTAGATCATGTTCACCTTATGCTTATCATGATTTATGTTTACCATGTGATTCATATATATCACAACTATGTAATGATTTATATCGTATTACTGGTATACCAATAACAAGTCAATTATGGTCTATTCAATCAAAACATAATCGTAATCGTAATAATAAAAGTCTATCAGTCAATGAACAAATACCATCGAATGAAGTGTTAAACTCATTAGTTAATGAATTGAATCAACATTATCCACAACAGTCATTTAAAACTCAATCCCTTTTGTCAAAACATTCAAATGTTGCTTCTACTACTATCAACACTAATGATGATGATGTTGCTAAACAAAAATCTAGTCATAACAACTTAACATTAGCTGATTGTGGTTTGAAATCAGGTGATGTTTGTAATTTATGTTTAACTGCTTCAAATCCATTAAATCATCATAAAAATCCAAGTAAAGCTCAACTATCTCACAATGATGTTGATACCCATTCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATTCCTAGTAGTTCTTCCACTGCCACTACTACCA-----GCTGCTGCTGCTGTTGACGTCTTCATCACTGAAAGTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCTTGTATTCTGTCAACAAATTNTATGTTCATCTGGTTTAATAAGATNTTTAACTGATCATGATTNTAGTTTATGGCCATGGGATATAACATTAACACGTATTANAGAACGTTTAATTGGTTGGTTTTGAAGTG-AATTACCCAAATTATCAAGAAATATTACATCA-TTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAAATTATCAGGTCAATTA-GAAGTGTTATGTATTGTAAT-GGGTACT-GGGATTGTAAAAATGTGGCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCATTTTACAACATCTTTACAATCAATGAAAATGGATGATATTCCTCGTCAGCAGGA]
[+] EMBL CD183566 [ACTGGTAGATCATGTTCACCTTATGCTTATCATGATTTATGTTTACCATGTGATTCATATATATCACAACTATGTAATGATTTATATCGTATTACTGGTATACCAATAACAAGTCAATTATGGTCTATTCAATCAAAACATAATCGTAATCGTAATAATAAAAGTCTATCAGTCAATGAACAAATACCATCGAATGAAGTGTTAAACTCATTAGTTAATGAATTGAATCAACATTATCCACAACAGTCATTTAAAACTCAATCCCTTTTGTCAAAACATTCAAATGTTGCTTCTACTACTATCAACACTAATGATGATGATGTTGCTAAACAAAAATCTAGTCATAACAACTTAACATTAGCTGATTGTGGTTTGAAATCAGGTGATGTTTGTAATTTATGTTTAACTGCTTCAAATCCATTAAATCATCATAAAAATCCAAGTAAAGCTCAACTATCTCACAATGATGTTGATACCCATTCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATTCCTAGTAGTTCTTCCACTGCCACTACTACCA CTGCTGCTGCTGTTGACGTCTTCATCACTGAA ]
[-] EMBL CD189956 [ TGCTTCAAATCCATTAAATCATCATAAAAATCCAAGTANAGCTCAACTATCTCACAGTGATGTTGATGCCCATTCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATTCCTAGTAGTTCTTCCACTGCCACTACTACCACTGCTGCTGCTGCTGCTGTTGACGTCTTCATCACTGAAACTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTTATTCCTGATGATCCAAGTTTGGAAGATCCGGAATTAGCCACACtg ]
[+] EMBL CD132481 [ aCTGCTGCTGCTGTTGACGTCTTCATCACTGAAAGTTCCTCAACTAGGAATAAGTCTAGCCGTAAAATATCAAATTCAAAAAAACCTAt ]
[+] EMBL CD187860 [ TGCTGTTGACGTCTTCATCACTGAAAGTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGAT AAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCTTGTATTCTGTCAACAAATTNTATGTTCATCTGGTTTAATAAGATNTTTAACTGATCATGATTNTAGTTTATGGCCATGGGATATAACATTAACACGTATTANAGAACGTTTAATTGGTTGGTTTTGAAGTG AATTACCCAAATTATCAAGAAATATTACATCATTTAAGTGTAGATAG TATCCTATTCTAGCAATGATTGTC AATTATCAGGTCAATTANAAAGTG TATGTATTG AATGGGGTACTGGGGATTGTAAAAATGTGGCCACCAACTGATCA TTTNCACCCTTACT AATGTA ]
[+] EMBL CD187831 [ CCTAATTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGATAACGAAGAGGAGGAGGAGGATGAAGATTATGACATGGATTATCATTATTCCAGTGATGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGTTCATCTGGTTTAATAAGATTTTTAACTGATCATGATTTTAGTTTATGGCCATGGGATATAACATTAACACGTATTAAAGAACGTTTAATTGGTTGG TTTGAAGTGAAATTACCAAATTTATCAAGAATAATTACATCA TTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAAATTATCAGGTCAATTA GAAGTGTTATGTATTGTAAT GGGTACT GGGATTGTAAAAATGTGGCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCATTTTACAACATCTTTACAATCAATGAAAATGGATGATATTCCTCGTCAGCAGGA]
[+] EMBL CD164829 [ TACATCA TTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAAATTATCAGGTCAATTA GAAGTGTTATGTATTGTAAT GGGTACT GGGATTGTAAAAATGTGGCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCATTTTACAACATCTTTACAATCAATGAAAAATGATGATAa ]
consensusID : consensus_9210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[GTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGGACCGGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGTTCATCTGGTTTAATAAGATTTTTAANCTGATCATGAT]
[-] EMBL CD159575 [GTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGGACCGGAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCTGATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTACAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAAACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTGTGATCGTAAACCATTATTCATCTATTTACATAATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGTTCATCTGGTTTAATAAGATTTTTAANCTGATCATGAT]
consensusID : consensus_9210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 377 fasta sequence
[CAGATGTAATTGTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGAACCGGAATGTGCAACTGAACGTGAAATTATTGCTCGACGACGTGTACTTTAAGAACAAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAAGGAATGGGAACGTGCTAAAGCCAAAGCGGAAGAAGATAAACGTAAACAACTTGAAGAAGAGAAACGTATAAATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCGGAACCGCCTACACCAAAGACACCAGCAGCTGAAGCATTTTTATCTACACCAAATGGTGTCGATGGTATTACAACGTTACGTTTTCGTTTACCT]
[+] EMBL CD114384 [CAGATGTAATTGTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGAACCGGAATGTGCAACTGAACGTGAAATTATTGCTCGACGACGTGTACTTTAAGAACAAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAAGGAATGGGAACGTGCTAAAGCCAAAGCGGAAGAAGATAAACGTAAACAACTTGAAGAAGAGAAACGTATAAATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCGGAACCGCCTACACCAAAGACACCAGCAGCTGAAGCATTTTTATCTACACCAAATGGTGTCGATGGTATTACAACGTTACGTTTTCGTTTACCT]
[+] EMBL CD127874 [ TATGGCAAGCTTATACAACATATTTGGAATTGTAAGAACCGGAATGTGCAACTGAACGTGAAATTATTGCTCGACGACGTGCACTATAAGAACAAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAATGAATGGGAACGTGCTATAGCCAAAGCGGAAGAAGATAAACGTGGACAACTTGAAGAAGAGAAACGTATAAATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9210#0 ACTGGTAGATCATGTTCACCTTATGCTTATCATGATTTATGTTTACCATGTGATTCATAT 60
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 ATATCACAACTATGTAATGATTTATATCGTATTACTGGTATACCAATAACAAGTCAATTA 120
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TGGTCTATTCAATCAAAACATAATCGTAATCGTAATAATAAAAGTCTATCAGTCAATGAA 180
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 CAAATACCATCGAATGAAGTGTTAAACTCATTAGTTAATGAATTGAATCAACATTATCCA 240
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 CAACAGTCATTTAAAACTCAATCCCTTTTGTCAAAACATTCAAATGTTGCTTCTACTACT 300
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 ATCAACACTAATGATGATGATGTTGCTAAACAAAAATCTAGTCATAACAACTTAACATTA 360
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GCTGATTGTGGTTTGAAATCAGGTGATGTTTGTAATTTATGTTTAACTGCTTCAAATCCA 420
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TTAAATCATCATAAAAATCCAAGTAAAGCTCAACTATCTCACAATGATGTTGATACCCAT 480
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TCCAAATCATTACAACAACGAGCAAAGAAATCATCATCAAATCCTCTTGATGATAATATT 540
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 CCTAGTAGTTCTTCCACTGCCACTACTACCAGCTGCTGCTGCTGTTGACGTCTTCATCAC 600
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TGAAAGTTCCTCAACTAGGAATAAGTCTAGTCGTAAAATATCAAATTCAAAAAAACCTAA 660
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TTATCGTAATGTGTCTCCAGAAATTGGATTCGATGACGATTATGATAACTATAACGACGA 720
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ----------------------------------------------------------CA 2
consensus_9210#0 TAACGAAGAGGAGGAGGAGGATG--AAGATTATGACATGGATTATCATTATTCCAGTGAT 778
consensus_9210#1 ---------GTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGGACCG 51
consensus_9210#2 GATGTAATTGTTGCAGAATTATGGCAAGCTTATACAACATATTTGGAATTGTTAGAACCG 62
* * ** * *** *** **** * *** * * *
consensus_9210#0 GAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCT 838
consensus_9210#1 GAAATACTTGATGAAACTGATGATAAAAAAATCACTCCATGGAATCAACCATTAATTCCT 111
consensus_9210#2 GAAT------GTGCAACTGAACGTGAAATTATTGCTCGACGACGTGTACTTTAAGAAC-- 114
*** ** ****** * *** ** *** * * * ** * * *
consensus_9210#0 GATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTA 898
consensus_9210#1 GATGATCCAAGTCTGGAAGATCCGGAATTAGCCACACAACAATTTTGTATAGGATTTTTA 171
consensus_9210#2 -AAGAAGCAGCCTATGAAGAATCATTACGACGTGATCAAGAGAAG-GAATGGGAACGTGC 172
* ** ** ***** * * * *** * * ** *** *
consensus_9210#0 CAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAA 958
consensus_9210#1 CAACGTTATTGTAGGGATGGTGTAACTATGTCACCACCATTTTCTACATGTAGTTTTGAA 231
consensus_9210#2 TAAAGCCAAAGC-GGAAGAAGATAA--ACGTAAACAAC-TTGAAGAAGAGAAACGTATAA 228
** * * * ** * *** * ** * ** * ** * * * * **
consensus_9210#0 ACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTG--TGATCGTAAACCATTATTCA 1016
consensus_9210#1 ACTGCTCTATCTTTGTCAGTTGGTACTAGTCAAGTGTG--TGATCGTAAACCATTATTCA 289
consensus_9210#2 ATGATGAAATAAAAGCTACACAGCATCGATTACTCATGGCTGCTAGTTTACCACCG--GA 286
* ** * * * * * * ** ** * ** **** *
consensus_9210#0 TCTATTTACAT-AATGATTCAAGTATAGCATGTCTTGTATTCTGTCAACAAATTNTATGT 1075
consensus_9210#1 TCTATTTACAT-AATGATTCAAGTATAGCATGTCATGTATTCTGTCAACAAATTTTATGT 348
consensus_9210#2 ACCGCCTACACCAAAGACACCAGCAGCTGAAGCATTTTTATCTA-CACCAAATG--GTGT 343
* **** ** ** * ** * * * * * *** ** ***** ***
consensus_9210#0 TCATCTGGTTTAATAAGATNTTTAAC-TGATCATGATTNTAGTTTATGGCCATGGGATAT 1134
consensus_9210#1 TCATCTGGTTTAATAAGATTTTTAANCTGATCATGAT----------------------- 385
consensus_9210#2 CGAT--GGTATTACAACGTTACGTTTTCGTTTACCT------------------------ 377
** *** * * ** * * * *
consensus_9210#0 AACATTAACACGTATTANAGAACGTTTAATTGGTTGGTTTTGAAGTGAATTACCCAAATT 1194
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 ATCAAGAAATATTACATCATTAAGTGTAGATAGTTATCCTATTCTAGCAATGATTGTCAA 1254
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 ATTATCAGGTCAATTAGAAGTGTTATGTATTGTAATGGGTACTGGGATTGTAAAAATGTG 1314
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 GCCACCAACTGATCATTTTCCACCTTTACTAAATGTACGTCGTAGTAGTAGTAGCAGTCA 1374
consensus_9210#1 ------------------------------------------------------------
consensus_9210#2 ------------------------------------------------------------
consensus_9210#0 TTTTACAACATCTTTACAATCAATGAAAATGGATGATATTCCTCGTCAGCAGGA 1428
consensus_9210#1 ------------------------------------------------------
consensus_9210#2 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||