These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 746 fasta sequence [CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCACCACTCATTTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCAAATGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATTTC] [+] EMBL CD083392 [CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCA ] [+] EMBL CD163525 [ CCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTG ] [-] EMBL CD163343 [ CAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGA ] [-] EMBL CD155809 [ TATCTCAATGTCAGTCGTGCTTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAAATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCCTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTC ] [+] EMBL CD154444 [ GGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTTTGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCTCATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCGATTCAATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGTTCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCACAACCACTCATTTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCA ] [+] EMBL CD124118 [ TATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCGTCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCAAATGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATTTC] consensusID : consensus_9212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 471 fasta sequence [CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCAACATGATCCGTAAGTGTACTTATTCTAATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATCGCTGTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGCATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGT--TATATATATG--TATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGACC] [+] EMBL CD165744 [CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCAACATGATCCGTAAGTGTACTTATTCTAATGATATTTACAATCCAAACAATTTTTGATTTGTCCTTATAACAAACAGATCGCTGTGAACACACTCACATATTGAGGTACAAACAGTGTTCGTCGATCAACTCCTCATTATTCACAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTATTACTCTGTCACCGTAGGATATGAGTATAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGTGCTTTATATATGTTTATATTCGAAGGCTCGTCCATTTA ] [-] EMBL CD162542 [ GTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGTATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGT TATATATATG TATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGACC] [-] EMBL CD162581 [ GTGAACACACTCACATATTGAGGTACAAACACTGTTCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCATTTCACTGTTACACATCAGCATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGATATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCATTGGAGTTCAATTTGAGTATTATCACTGAAGGGT TATATATATG TATATAGAAATGCTCGTCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCAGGTGTCAACATGAtc] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9212#0 CTGCTGCTCCCACATTCCCCAGTAGGCATACACACACATCTATCTCAATGTCAGTCGTGC 60 consensus_9212#1 ------------------------------------------------------------ consensus_9212#0 TTTATGTTTAACTCAACGGATTATCACTTTCATTTTCATCGAACATCCAGCTTTCCAGAA 120 consensus_9212#1 ------------------------------------------------------------ consensus_9212#0 ATGTGGTCACAATCATCGTATTCCGTTCCATCTGTACATTGTTTGCTCAATCATTTTCTT 180 consensus_9212#1 ------------------------------------------------------------ consensus_9212#0 TGCAACCATTTCCATTCGAGTGCTTCAACATGCACAGATTGTATACATCATTGAGCGTCT 240 consensus_9212#1 ---------------------CTGACAATCAACATAAATTAGCAATGAAGCGAGGTGTCA 39 *** ** * *** * * *** consensus_9212#0 -CATGGTGAACAAGCGAAACGCTCACGAATGTGTATGCACTTATTTGCAATTCTTCAGCG 299 consensus_9212#1 ACATGATCCGTAAGTGTACTTATTCTAATGATATTTACAATC-CAAACAATTTTTGATTT 98 **** * *** * * * * * * * ** * ***** ** * consensus_9212#0 ATTCA-ATAACTTGAAGTGATCACTGTGAACACACTCACACATTGAGGTACAAACAGTGT 358 consensus_9212#1 GTCCTTATAAC--AAACAGATCGCTGTGAACACACTCACATATTGAGGTACAAACACTGT 156 * * ***** ** **** ***************** *************** *** consensus_9212#0 TCGTCGATCGACTCCTCATTATTCATAGTGAGTGATGTATCATAGAGCAGCACCACTCAT 418 consensus_9212#1 TCGACGATCAACTCCTCATTATTCATAGTGAGTGATGTTTCATAAAGCACAACCACTCAT 216 *** ***** **************************** ***** **** ********* consensus_9212#0 TTCACTGTTCCACATCAGCATTTCGATGCATGTCATTTTACTACTCCGTCACCATAGGAT 478 consensus_9212#1 TTCACTGTTACACATCAGCATTTCGATGCATGTCATTTTGTTACTCTGTCACCGTAGGAT 276 ********* ***************************** ***** ****** ****** consensus_9212#0 ATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCA 538 consensus_9212#1 ATGAGTAAAGCTTGAATGCAACTTCTTACTGGAAGGAGCTTCAAATTAGCATATCAGTCA 336 ************************************************************ consensus_9212#0 TTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCG 598 consensus_9212#1 TTGGAGTTCAATTTGAGTATTATCACTGAAGGGTTATATATATGTATATAGAAATGCTCG 396 ************************************************************ consensus_9212#0 TCCATTTACATGTGAATGTTTATACATTCGTTATTTGTAGATAAACCAGCAATGAAGCCA 658 consensus_9212#1 TCCATTTACATTCGACTGTTTATATAATCGTTGTTTGTAGATAAATCAGCAAAGAAGCCA 456 *********** ** ******** * ***** ************ ****** ******* consensus_9212#0 AATGTTCACATGATGCGTAAGTGTACTTATTCTGATGATATTTACAATCCAAACAATTTT 718 consensus_9212#1 GGTGTCAACATGACC--------------------------------------------- 471 *** ****** consensus_9212#0 TGATTTGTCCTTATAACAAACAGATTTC 746 consensus_9212#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||