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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1125 fasta sequence
[AGCCATATTCGGCCGACGCGCTTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAAGAGATAATCGAGGAGAGATATGTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTATTNNTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTNCTCTAATATTCTGGGTCGG-ATTCATATAACTATTAATAACTNNTAGACNGAT-ATGATGATGGCATAAACTAATATTAAATTTTCTGACTTTCTGTAA-TCTCTTACTCAAATAAACA-TA-TTTTCTGATTNTTTTG-AGTA-TTTTTATTCCC-TTTTATTT-CCATGTANGGC-TG-ATGGAAG-AAC-A-TTTTCA-TTTCC-TAC-TTTTATC-ANNT--A-TATTTGG--ACA-TTGTG-CC-ATATCT]
[+] EMBL CD081656 [AGCCATATTCGGCCGACGCGCTTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAAGAGATAATCGAGGAGAGATATGTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTNTCAGAATACCGAGCTATATCATTATTNNTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTNCTCTAATATTCTGGGTCGG ATTCATATAACTATTAATAACTNNTAGACNGAT ATGATGATGGCATAAACTAATATTAAATTTTCTGACTTTCTGTAA TCTCTTACTCAAATAAACA TA TTTTCTGATTNTTTTG AGTA TTTTTATTCCC TTTTATTT CCATGTANGGC TG ATGGAAG AAC A TTTTCA TTTCC TAC TTTTATC ANNT A TATTTGG ACA TTGTG CC ATATCT]
[+] EMBL CD063875 [ TTTAGGTC TGTCGTCACAAGAGATAATCGAGGAGAGAT TGTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATG ]
[+] EMBL CD067298 [ GTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTNTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTA ]
[-] EMBL CD076092 [ ATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTATTTTTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTTCTCTAATATTCT GTTCGGTATTCATATAACTATTAATAACTTTTAGAC GATAATGATGATGGCATAAACTAATATTAAATTTCCTGAC TTCTGTAATTCTCTTACTCAAAT AACATTATTTTTCTGATTTTTTTGAAGTATTTTTTATTCCCTTTTTATTTCCCATGTA GGCTTGTATGGAAGAAACGATTTTTCATTTTCCTTACTTTTTATCTAGTTTCATTATTTGGTAACATTTGTGTCCAATATC ]
[-] EMBL CD072340 [ TTTGAAAAA TGAAGAGAATCCATCTGACTGATGAAACTCTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAGTCATAAATAGAATGAGAATTCAAA ]
[-] EMBL CD067406 [ ACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCTTGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTATT ]
consensusID : consensus_9213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CCCTCCGAGGCCANAATTCGGCACGAGGGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCANAACTGGCATACTTGACACGAACTNTATTATATTCATCATATGTTTCTTGTATAACTT]
[+] EMBL CD082497 [CCCTCCGAGGCCANAATTCGGCACGAGGGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGCTAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTTCATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATATGTAGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTATTGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAATAGTGCCAAACTTCGACGAATTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTATGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAAAGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACAATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTATATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAGAATGAGAATTCANAACTGGCATACTTGACACGAACTNTATTATATTCATCATATGTTTCTTGTATAACTT]
consensusID : consensus_9213#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[TATGTTTCTTGTATAACTTCATAACTTTCTGATATATGATTATTTTCAGAATACCGAGCTATATCATTAGTTTTCTGGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTTCTCTAATATTCTGTTCGGTATTCATATAACTATTAATAACTTTTAGACGATAATGATGATGGCATAAACTAATAGTAAATTTCCTGACTTCTGTAATTCTCTTACTCAAATAACATTATTGTTCTGAGTTTTTTTGAAGTATTTTTTATTCCCTTGTTATTTCCCAAGTAGGCTTGTATGGAAGAAACGATTTTTCATTGTTCCGTTACTTCTTTATCTAGTTTCATTATGTGGTAACATTTGTTGTCCAAATATCATG]
[-] EMBL CD065522 [TATGTTTCTTGTATAACTTCATAACTTTCTGATATATGATTATTTTCAGAATACCGAGCTATATCATTAGTTTTCTGGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTTCTCTAATATTCTGTTCGGTATTCATATAACTATTAATAACTTTTAGACGATAATGATGATGGCATAAACTAATAGTAAATTTCCTGACTTCTGTAATTCTCTTACTCAAATAACATTATTGTTCTGAGTTTTTTTGAAGTATTTTTTATTCCCTTGTTATTTCCCAAGTAGGCTTGTATGGAAGAAACGATTTTTCATTGTTCCGTTACTTCTTTATCTAGTTTCATTATGTGGTAACATTTGTTGTCCAAATATCATG]
consensusID : consensus_9213#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence
[GTATTTAATGGACTTATTGTCGAAGGCTTTGGTTGCACAGAGACTATGGGAGTTGTAACGGTATCTTTAGTCGGAGAATTTCGCATTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAA]
[+] EMBL CD182974 [GTATTTAATGGACTTATTGTCGAAGGCTTTGGTTGCACAGAGACTATGGGAGTTGTAACGGTATCTTTAGTCGGAGAATTTCGCATTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAAATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9213#1 ------------------------------------------------------------
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 AGCCATATTCGGCCGACGCGCTTGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCA 60
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 ----------------------------------CCCTCCGAGGCCANAATTCGGCACGA 26
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 AATTGGCCGACGTATTAGATTTAGGTCTTGTTGTCAAAAGAGATAATCGAGGAGAGATAT 120
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 GGGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGC 86
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 GTGTGAAAGGTAAGCGATGCACCAAAGGCTATTACAAAGATCCTCAAAATACAGCACTGC 180
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 TAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTT 146
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TAATTGACTCAGACGGTTGGTTACATACTGGAGATATAGGAGAATGGACCTCAGAAGGTT 240
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 CATTGATGTTGGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATA--TGT 204
consensus_9213#3 ---------------------------GTATTT---AATGGACTTATTGTCGAAGGCTTT 30
consensus_9213#0 CATTGATGTTAGTTGATCGAGTTAAAAGTATTTTCAAGTTGGCTCAAGGTGAATA--TGT 298
consensus_9213#2 ----TATGTTTCTTGTATAACTTCATAACTTTCTGATATATGATTATTTTCAGAATACCG 56
** * * * *
consensus_9213#1 AGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTAT 264
consensus_9213#3 GGTTGCACAGAGACTATGGGAGTTGTAACGGTATC----TTTAGTCGGAGAATTTCGCAT 86
consensus_9213#0 AGCGCCAGAAAGACTGGAAGCACTTTATCAAAGTTGTAGTCTAATTAGTCAAATTTTTAT 358
consensus_9213#2 AGCT------ATATCATTAGTTTTCTGGCATTCTGGTTTTTATGATGGTCTCTGCTCTGT 110
* * * * * * * * * * *
consensus_9213#1 TGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAAT--AGTGCCAAACTTCGACGAA 322
consensus_9213#3 TGGTGCTTTGGGTGCAGTTGCTTATGGTGTAGAAGTCAA--ATTGGCCGACGTATTAGAT 144
consensus_9213#0 TGATGCCAATCCTAAATCCACTTATCCTGTAGCTATAAT--AGTGCCAAACTTCGACGAA 416
consensus_9213#2 TTGTTCATTTATTTATTTCTCTAATATTCTGTTCGGTATTCATATAACTATTAATAACTT 170
* * * * ** ** * * * * *
consensus_9213#1 TTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTA 382
consensus_9213#3 TTAGGT---CTTGTTGTCAAAA-------------------------------------- 163
consensus_9213#0 TTACGTGAATCACTTAGCAAGACAGACCCTGGATTGGTTAATTTATCCGATCATGATTTA 476
consensus_9213#2 TTAGACGATAATGATGATGGCATAAACTAATAGTAAATTTCCTGACTTCTGTAATTCTCT 230
*** * *
consensus_9213#1 TGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAA 442
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TGTCAACATGAAATTATCCATCGAAAATATTTAAATGTTTTGGATCAAATTGCCAATCAA 536
consensus_9213#2 TACTCAAATAACATTATTGTTCTGAGTTTTTTTGAAGTATTTTTT----ATTCCCTTGTT 286
consensus_9213#1 AGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACA 502
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 AGATTTCTGAAAGGATTTGAAAAATTGAAGAAAATCCATCTGACTGATGAAACTTTCACA 596
consensus_9213#2 ATTTCCCAAGTAGGCTTGTATGGAAGAAACGATTTTTCATTGTTCCGTTACTTCTTTATC 346
consensus_9213#1 ATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTA 562
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 ATAGAAAATGGGTTGCTCACTCCAACACTCAAGATTTCCCGATACAAAGCCAGAAAGGTA 656
consensus_9213#2 TAGTTTCATTATGTGGTAACATTTGTTGTCCAAATATCATG------------------- 387
consensus_9213#1 TATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAG 622
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TATTCCGAAATTATAAACAGATTATGTGACGAAATTATGTCTACGGAAAATCATAAATAG 716
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 AATGAGAATTCANAACTGGCATACTTGACACGAACTNTATTATATTCATCATATGTTTCT 682
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 AATGAGAATTCAAAACTGGCATACTTGACACGAACTTTATTATATTCATCATATGTTTCT 776
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 TGTATAACTT-------------------------------------------------- 692
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TGTATAACTTCATAACTTTTTGATATATGATTATTTTCAGAATACCGAGCTATATCATTA 836
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 ------------------------------------------------------------
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TTNNTCTTGCATTCTGGTTTTTATGATGGTCTCTGCTCTGTTTGTTCATTTATTTATTNC 896
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 ------------------------------------------------------------
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TCTAATATTCTGGGTCGGATTCATATAACTATTAATAACTNNTAGACNGATATGATGATG 956
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 ------------------------------------------------------------
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 GCATAAACTAATATTAAATTTTCTGACTTTCTGTAATCTCTTACTCAAATAAACATATTT 1016
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 ------------------------------------------------------------
consensus_9213#3 ------------------------------------------------------------
consensus_9213#0 TCTGATTNTTTTGAGTATTTTTATTCCCTTTTATTTCCATGTANGGCTGATGGAAGAACA 1076
consensus_9213#2 ------------------------------------------------------------
consensus_9213#1 -------------------------------------------------
consensus_9213#3 -------------------------------------------------
consensus_9213#0 TTTTCATTTCCTACTTTTATCANNTATATTTGGACATTGTGCCATATCT 1125
consensus_9213#2 -------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||