These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1227 fasta sequence [AAAGAAGTCATCATACCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTTATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAAAGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGTATCTATATTATTTACTGTAATGAAGATA] [-] EMBL CD142291 [AAAGAAGTCATCATACCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGCGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTAT ] [+] EMBL CD078289 [ CCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTG ] [+] EMBL CD078375 [ CCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGCGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTG ] [+] EMBL CD083817 [ cgaggAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCA ] [-] EMBL CD150489 [ TTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGGTGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTGGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAt ] [-] EMBL CD072935 [ AGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTTATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAAAGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGTATCTATATTATTTACTGTAATGAAGATA] [-] EMBL CD076863 [ CCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTTATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAAAGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGTATCTATATTATTTACTGTAATGAAGATA] consensusID : consensus_9214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CGTCACGAGCCTAAAAATAAAATGTTCAATCTTTTCCCGTGTATTCTTTACTTCTACTACATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTNTACTGCCTTTNT] [+] EMBL CD083292 [CGTCACGAGCCTAAAAATAAAATGTTCAATCTTTTCCCGTGTATTCTTTACTTCTACTACATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTNTACTGCCTTTNT] consensusID : consensus_9214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TCGAGGCAAGAATCGGCACGAGGTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATA] [+] EMBL CD077375 [TCGAGGCAAGAATCGGCACGAGGTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9214#0 AAAGAAGTCATCATACCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCAT 60 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 AATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGC 120 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 TCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGAT 180 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 TATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAG 240 consensus_9214#1 ----------------------------------------------------------CG 2 consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 TTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTG-ATTCTTTACTTCTACTAGAT 299 consensus_9214#1 TCACGAGCCTAAAAATAAAATGTTCAATCTTTTCCCGTGTATTCTTTACTTCTACTACAT 62 consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 CAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTT 359 consensus_9214#1 CAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTT 122 consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 AATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCC 419 consensus_9214#1 AATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCC 182 consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 TGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATA 479 consensus_9214#1 TGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATA 242 consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 ATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCAT 539 consensus_9214#1 ATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCAT 302 consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 TATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGC 599 consensus_9214#1 TATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGC 362 consensus_9214#2 --------------------------TCGAGGCAAGAATCGGCACGAGGTCTGTTACTGC 34 ** ** * *********** consensus_9214#0 CGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTC 659 consensus_9214#1 CGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTC 422 consensus_9214#2 CGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTC 94 ************************************************************ consensus_9214#0 GTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGT 719 consensus_9214#1 GTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGT 482 consensus_9214#2 GTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGT 154 ************************************************************ consensus_9214#0 ATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGAT 779 consensus_9214#1 ATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGAT 542 consensus_9214#2 ATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGAT 214 ************************************************************ consensus_9214#0 GGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTG 839 consensus_9214#1 GGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTNTACTG 602 consensus_9214#2 GGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTG 274 ****************************************************** ***** consensus_9214#0 CCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGT 899 consensus_9214#1 CCTTTNT----------------------------------------------------- 609 consensus_9214#2 CCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGT 334 ***** * consensus_9214#0 GTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTA 959 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 GTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTA 394 consensus_9214#0 GCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCA 1019 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 GCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCA 454 consensus_9214#0 TTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTT 1079 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 TTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATA--------------- 499 consensus_9214#0 ATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAA 1139 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 AGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGT 1199 consensus_9214#1 ------------------------------------------------------------ consensus_9214#2 ------------------------------------------------------------ consensus_9214#0 ATCTATATTATTTACTGTAATGAAGATA 1227 consensus_9214#1 ---------------------------- consensus_9214#2 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||