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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1227 fasta sequence
[AAAGAAGTCATCATACCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTTATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAAAGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGTATCTATATTATTTACTGTAATGAAGATA]
[-] EMBL CD142291 [AAAGAAGTCATCATACCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGCGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTAT ]
[+] EMBL CD078289 [ CCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTG ]
[+] EMBL CD078375 [ CCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCATAATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGCGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTG ]
[+] EMBL CD083817 [ cgaggAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGCTCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGATTATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAGTTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTGATTCTTTACTTCTACTAGATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCA ]
[-] EMBL CD150489 [ TTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGGTGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTGGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAt ]
[-] EMBL CD072935 [ AGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTTATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAAAGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGTATCTATATTATTTACTGTAATGAAGATA]
[-] EMBL CD076863 [ CCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTTATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAAAGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGTATCTATATTATTTACTGTAATGAAGATA]
consensusID : consensus_9214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[CGTCACGAGCCTAAAAATAAAATGTTCAATCTTTTCCCGTGTATTCTTTACTTCTACTACATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTNTACTGCCTTTNT]
[+] EMBL CD083292 [CGTCACGAGCCTAAAAATAAAATGTTCAATCTTTTCCCGTGTATTCTTTACTTCTACTACATCAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTTAATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCCTGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATAATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCATTATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTNTACTGCCTTTNT]
consensusID : consensus_9214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[TCGAGGCAAGAATCGGCACGAGGTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATA]
[+] EMBL CD077375 [TCGAGGCAAGAATCGGCACGAGGTCTGTTACTGCCGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTCGTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGTATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGATGGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTGCCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGTGTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTAGCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCATTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9214#0 AAAGAAGTCATCATACCACAAATGAATTCTAATGCACTGTTATCACTGAACAACTTGCAT 60
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 AATAACAATAACAATGAAGAACTCTCATCTTCAGCTGATTCTTCAGATCCTGATCTATGC 120
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 TCAAATCAATCAGAAAAAGATTCAGTTGTCTATTTAGTTGAAACAAATCAACCATCAGAT 180
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 TATTGGTGTGAATCTGCGGAATATAATGGACCCAGTATAGTTTAATATTACTGAAGTGAG 240
consensus_9214#1 ----------------------------------------------------------CG 2
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 TTTTTTTGCTAAAAATAAAATGTTCAATCTTTTCCCGTG-ATTCTTTACTTCTACTAGAT 299
consensus_9214#1 TCACGAGCCTAAAAATAAAATGTTCAATCTTTTCCCGTGTATTCTTTACTTCTACTACAT 62
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 CAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTT 359
consensus_9214#1 CAGCTTATCACGTCCACCATTCCTAGGAACGTACTAGCCTCATTATTATTATTTATCGTT 122
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 AATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCC 419
consensus_9214#1 AATGATTCACTCTCACGGCATTTTTCACTGTTCATCCAATTTTGAATATTTCAATATCCC 182
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 TGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATA 479
consensus_9214#1 TGCTTCTGTTACTCTCTATTCCTTTTCTCTTTACTTATGTGATAATAAAATCAGTTTATA 242
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 ATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCAT 539
consensus_9214#1 ATTTGATGTACAAATTCACTTCGCTTCATGTTTATCATAACACTGGTCAACATTCTGCAT 302
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 TATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGC 599
consensus_9214#1 TATTTTTCACACATCAGTACACCCATTCTGTTTTTTTTGCGATATCTTTTCTGTTACTGC 362
consensus_9214#2 --------------------------TCGAGGCAAGAATCGGCACGAGGTCTGTTACTGC 34
** ** * ***********
consensus_9214#0 CGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTC 659
consensus_9214#1 CGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTC 422
consensus_9214#2 CGCCATGTTTAGCTCATTCTTGCTTATGTTTGTTCACATTTTAATTATTTAAAGAAATTC 94
************************************************************
consensus_9214#0 GTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGT 719
consensus_9214#1 GTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGT 482
consensus_9214#2 GTGTCCTTCTTGTTGTTGTAGTTTTCCATCGTGAAAACAAAACACAAAGAGGATCATTGT 154
************************************************************
consensus_9214#0 ATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGAT 779
consensus_9214#1 ATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGAT 542
consensus_9214#2 ATATGCATCCTTGTTATTCATGTTCTCGTAGCATCGTTCTGCTGAAGTTATTTCCTTGAT 214
************************************************************
consensus_9214#0 GGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTG 839
consensus_9214#1 GGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTNTACTG 602
consensus_9214#2 GGTTGACTATACTAGTATTGTTAGTAGTGGCAATCTATTCATCAGAATAATGTTTTACTG 274
****************************************************** *****
consensus_9214#0 CCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGT 899
consensus_9214#1 CCTTTNT----------------------------------------------------- 609
consensus_9214#2 CCTTTTTGTTCTCCATGTACCCTCCTTTCTGTTCTCCTCCCCGCCAATATTTTTTCCCGT 334
***** *
consensus_9214#0 GTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTA 959
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 GTGTGGTTTTTGTGGTCAGATCCAGTCACAGTACTATTCGTTGTAGTGGCAGTAGTAGTA 394
consensus_9214#0 GCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCA 1019
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 GCAGTATCGATAATAATAATAATAATCAACTTAAAAGTTATCTCTTCCATATTTATCTCA 454
consensus_9214#0 TTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATAAATATTCATAAATTT 1079
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 TTTCGTTACTGAGTGCGAAAACACTATCTGTAATATACATCTATA--------------- 499
consensus_9214#0 ATGTAACAATTTAAAAACAATACATACTTCATACATTATCAAGTCTGAAATTAAAAAAAA 1139
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 AGAATATATTATGTTGATTCATGTATATTTCAGCGATTGTTCGGTATTACACTTGCTTGT 1199
consensus_9214#1 ------------------------------------------------------------
consensus_9214#2 ------------------------------------------------------------
consensus_9214#0 ATCTATATTATTTACTGTAATGAAGATA 1227
consensus_9214#1 ----------------------------
consensus_9214#2 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||