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Schistosoma mansoni
cluster # 9217 cluster # 9217       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9217#0 length = 952 sequences # 8  
consensus_9217#1 length = 431 sequences # 1  

consensusID : consensus_9217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 952
fasta sequence
                              [GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT-CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA]

[+] EMBL CD139516             [GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATCTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAGGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD144653             [        CAATCATATGGAGACACTGAACTGTATCNTACATG TATCCTGAGTCCAAACGTGCCAGAAACATAGGACAGTTAACCATTTGGTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGACAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAACAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAACGAAGGGCAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD144755             [             ccacGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGCCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTCCGtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD144632             [                               GTATTCTATATGTTNTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCCGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAGATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD144628             [                               GTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTACCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AA559648             [                                                                                                                                                                                                                                                                       ACTAAGCGTNTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTNGTCTGGGGTCTTTATCATCCCAGTGTCAACAGCTCGCGGGCTGACTTANGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACC                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD090549             [                                                                                                                                                                                                                                                                                                                                                                                         TACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAA                                                                                                                                                                                                                                                    ]
[-] EMBL CD115292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTCGTTCGGCCACACCTAACTCTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA]


>consensus_9217#0 GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAAC GTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGA TGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAA GTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTAT CTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAG GACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCATCCAGTGTCAAC AGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGT TTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCA AACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTT CACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCT AACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACA CCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGC AATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACT TACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAAT CACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTC AATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA



consensusID : consensus_9217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence
                              [CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACACACA]

[-] EMBL CD068717             [CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACACACA]


>consensus_9217#1 CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCG GCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCG GTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACC ACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGT CAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCC AACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACC AACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACG ATTCACACACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9217#0      GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAAC 60
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      GTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGA 120
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      TGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAA 180
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      GTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTAT 240
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      CTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAG 300
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      GACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCATCCAGTGTCAAC 360
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      AGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGT 420
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      TTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCA 480
consensus_9217#1      ------------------------------------------------------------
                                                                                  

consensus_9217#0      AACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTT 540
consensus_9217#1      ----------------------------------------------------CCAGAATG 8
                                                                           **   * 

consensus_9217#0      CACAACACCAACAG-TCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACC 599
consensus_9217#1      GCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACC 68
                        ************ *********************************************

consensus_9217#0      TAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCAC 659
consensus_9217#1      TAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCAC 128
                      ************************* **********************************

consensus_9217#0      ACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCG 719
consensus_9217#1      ACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCG 188
                      ************************************************************

consensus_9217#0      CAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACAC 779
consensus_9217#1      CAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACAC 248
                      ************************************************************

consensus_9217#0      TTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAA 839
consensus_9217#1      TTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAA 308
                      **************** *******************************************

consensus_9217#0      TCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTT 899
consensus_9217#1      TCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTT 368
                      ***************************************** ******************

consensus_9217#0      CAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA------- 952
consensus_9217#1      CAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACAC 428
                      *****************************************************       

consensus_9217#0      ---
consensus_9217#1      ACA 431
                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)