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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 952 fasta sequence
[GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT-CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA]
[+] EMBL CD139516 [GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATCTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAGGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAA ]
[-] EMBL CD144653 [ CAATCATATGGAGACACTGAACTGTATCNTACATG TATCCTGAGTCCAAACGTGCCAGAAACATAGGACAGTTAACCATTTGGTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGACAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAACAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAACGAAGGGCAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC ]
[+] EMBL CD144755 [ ccacGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGCCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTCCGtg ]
[-] EMBL CD144632 [ GTATTCTATATGTTNTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCCGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAGATCCAGTTTCATCCTATCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC ]
[-] EMBL CD144628 [ GTATTCTATATGTTTTCCTGAGTCCAAACGTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGATGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAAGTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTACCTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCAT CCAGTGTCAACAGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTC ]
[-] EMBL AA559648 [ ACTAAGCGTNTCAGCAGAGCGGACCCTTAAAATGAAGGACAAAGTAAGACTGGTACCTCCAAAAAGTNGTCTGGGGTCTTTATCATCCCAGTGTCAACAGCTCGCGGGCTGACTTANGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACC ]
[-] EMBL CD090549 [ TACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGTTTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCAAACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTTCACAACACCAACAGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAA ]
[-] EMBL CD115292 [ TTTCGTTCGGCCACACCTAACTCTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA]
consensusID : consensus_9217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACACACA]
[-] EMBL CD068717 [CCAGAATGGCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACCTAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCACACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCGCAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACACTTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAATCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTTCAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACACACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9217#0 GGCGACTCCAACCATATGGAGATGTTGTACTGTATTCTATATGTTTTCCTGAGTCCAAAC 60
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 GTACCAGAAACCCAGGACAGTTAACCATTTGTTTCCTTACTCTTATGTGTCGTTGGCGGA 120
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 TGAGGACTCTGGCATGATGGATGCTTCTGGCCAAGCCAAGTTTAAAAACTTGAGTTTGAA 180
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 GTCTTCGTTCTAAAAAGTCTTCTATCTTCAAGCCCAAAACGAAATCCAGTTTCATCCTAT 240
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 CTTCGGGAAGTACACCAACTCGAACTAAGCGTCTCAGCAGAGCGGACCCTTAAAATGAAG 300
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 GACAAAGTAAGACTGGTACCTCCAAAAAGTCGTCTGGGGTCTTTATCATCCAGTGTCAAC 360
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 AGCTCGCGGGCTGACTTACGTATCTTGGCTAAGACGTATTTTACTCTCCACACTTCGCGT 420
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 TTGTTGCGCAGACCATATTCACCAATGAGCTTTAACTCTTGATCTAAACGCTCCTTCTCA 480
consensus_9217#1 ------------------------------------------------------------
consensus_9217#0 AACGGTCTTCGCGGAGTCGCATAGGTCTTGCCAAAAACTTTAGGTACCCTGCTCATTTTT 540
consensus_9217#1 ----------------------------------------------------CCAGAATG 8
** *
consensus_9217#0 CACAACACCAACAG-TCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACC 599
consensus_9217#1 GCCAACACCAACAGGTCGACCACTTCATGGACCAATGCGAAGTTTTCGTTCGGCCACACC 68
************ *********************************************
consensus_9217#0 TAACTTTAAACCAACCTACATCTGTATACACTAACGCTAAATAATCACACCGGTTGGCAC 659
consensus_9217#1 TAACTTTAAACCAACCTACATCTGTCTACACTAACGCTAAATAATCACACCGGTTGGCAC 128
************************* **********************************
consensus_9217#0 ACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCG 719
consensus_9217#1 ACCGACATCTCACCTATCCCAAAAAGTCACGCAAATTGCTAACGGACAAACCACTTCGCG 188
************************************************************
consensus_9217#0 CAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACAC 779
consensus_9217#1 CAATCCCTGTCCACAACAACGATTCACACACTGAACAACAAAAACACCGCGTCAAAACAC 248
************************************************************
consensus_9217#0 TTACGATTGTTAGACTAAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAA 839
consensus_9217#1 TTACGATTGTTAGACTGAACATTAGAATACTAATGATACTGATACTAACGCCAACACTAA 308
**************** *******************************************
consensus_9217#0 TCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAAGCGCAATACCAACTCCTT 899
consensus_9217#1 TCACAACAACAAAAATAATTTAAATCACATGTCCAGAGGTAGGCGCAATACCAACTCCTT 368
***************************************** ******************
consensus_9217#0 CAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGA------- 952
consensus_9217#1 CAATCCACATCAGTCCAGACACCAACACTCCCCATCCACTGACACAACAACGATTCACAC 428
*****************************************************
consensus_9217#0 ---
consensus_9217#1 ACA 431
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||