These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 709 fasta sequence [GAGCCATATTCGGCACGAGGTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC-TTTTGCAGTTGACAAAG-TAGATAAGTCA-CAAAGCCATTCA-TTCTCGAGT-GAAACCTCG-TCGGTTTCTCGT-AAACAGGATAAACTA-CCCAATTATCT-AAAGTC-AAAAAGGAAGCACCTAGATAGACTAGGACAAGATGGAGANGTACCTAGAGGTTGGAACTGGGTTAGTGNTAT-AAACACCTGC-ACAAACTGGATCAGCATCATAGAGGCATNATTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCGCGTTTCATATTNGCCATTTGATTATGGGTT-AAATGATAAGAGGGTCATGANNTTCCTAAAT-ATGAATT] [+] EMBL CD081610 [GAGCCATATTCGGCACGAGGTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC TTTTGCAGTTGACAAAG TAGATAAGTCA CAAAGCCATTCA TTCTCGAGT GAAACCTCG TCGGTTTCTCGT AACAGGATAAACTA CCCAATTATCT AAAGTC AAAAAGGAAGCACCTAGATAGACTAGGACAAGATGGAGANGTACCTAGAGGTTGGAACTGGGTTAGTGNTAT AAACACCTGC ACAAACTGGATCAGCATCATAGAGGCATNATTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCGCGTTTCATATTNGCCATTTGATTATGGGTT AAATGATAAGAGGGTCATGANNTTCCTAAAT ATGAAT ] [+] EMBL CD135811 [ GCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAAGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGGTAACGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC TTTTGCAGTTGACAAAG TAGATAAGTCA CAAAGCCATTCA TTCTCGAGT GAAACCTCG TCGGTTTCTCGT AAACAGGATAAACTA CC ] [-] EMBL CD075433 [ AATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC TTTTGCAGTTGACAAAG TAGATAAGTCA CAAAGCCATTCA TTCTCGAGT GAAACCTCG TCGGTTTCTCGT AAACAGGATAAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCACCTAGATAGACTAGGACAAGATGGAGAGTTACCTAGAGGTTGGAACTGGGTTAGTGTAATAAAACACCTGCAACAAACTGGATCAGCATCATAGAGGCATATTTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCGCGTTTCATATTGTCCA TTGATTATGGGTTAAAATGATAAGAGGGTCATGA GTTTCTAAATAATGTATT] [+] EMBL CD135808 [ AAGTTTACTGGCCTGAAAGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAAGTCAACTTGGCTCAACACTAACATTTCATTTAATTGAGTTTCTAAAGGAAAATCATGAACGATTTGCTAAATCTTTTTGCCGTTGACAAAGTTAGATAAATTACCAAAGCCATTCATTTCTCGAGTGGAAACCTCGTTCGGTTCTTCGTAAAACAGATTAAACTA CCCccaat ] consensusID : consensus_9219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 510 fasta sequence [TCTGTCCTGGGGCACTCAAGGTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATCCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGGATAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCA] [+] EMBL CD133132 [TCTGTCCTGGGGCACTCAAGGTCCCTTTCTGACATGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGCGCTAAGATCAATTCTCGATGAAG ] [+] EMBL CD133150 [ CTGTCCTGGGGCACTCAAGGTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATCCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGGATAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCA] [+] EMBL CD171339 [ tTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAANATCATGAGCGATTNGCT ] consensusID : consensus_9219#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GCCTTGTCGTGTGTGGAGTGGCATTTTGTGACCCCTGCACAGCGAGGAGGCTCCAGGGCTAGAATGCAATTGTCGAGTCCCGATCAATTGTTGAGCTCACACGATTATGGTTGGGAACACGCGGACGGGTGACGCAGGAACGCACTTCTTCATTCATCGTACAAGTTTACTGGCCGGAGGTATACACTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGATAAACTACCCCATTATCTAAAAGTCAAAAAGGAAGCACCTAGATA] [+] EMBL CD193276 [GCCTTGTCGTGTGTGGAGTGGCATTTTGTGACCCCTGCACAGCGAGGAGGCTCCAGGGCTAGAATGCAATTGTCGAGTCCCGATCAATTGTTGAGCTCACACGATTATGGTTGGGAACACGCGGACGGGTGACGCAGGAACGCACTTCTTCATTCATCGTACAAGTTTACTGGCCGGAGGTATACACTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGATAAACTACCCCATTATCTAAAAGTCAAAAAGGAAGCACCTAGATA] consensusID : consensus_9219#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [ACCCTGAAATCATTTTGATTCACAAAAGCAGTTAATCAATAATGAGGCCTGGTTTTGGGTCTCAACTTCCTGACGAGACACTTCTGATAGTCTCCATTGTTTTACGTTTTAGCTAATAATCAATTGTTTTGCCTTATACCACTATTTCTTCATTTTGTTTTAGTGAGGAATGGCAATATGTGACCCAAGAGAGGTTTGCTTTGGCGCCGTTAGTTTAATACTTTAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGATTGATGATATCAGACGATTATAATTTGGAATACNAAGTGNGTGAAGCAGGAACGACT] [+] EMBL CD142665 [ACCCTGAAATCATTTTGATTCACAAAAGCAGTTAATCAATAATGAGGCCTGGTTTTGGGTCTCAACTTCCTGACGAGACACTTCTGATAGTCTCCATTGTTTTACGTTTTAGCTAATAATCAATTGTTTTGCCTTATACCACTATTTCTTCATTTTGTTTTAGTGAGGAATGGCAATATGTGACCCAAGAGAGGTTTGCTTTGGCGCCGTTAGTTTAATACTTTAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGATTGATGATATCAGACGATTATAATTTGGAATACNAAGTGNGTGAAGCAGGAACGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9219#0 -------GAGCCATATTCGGCACGAGGTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGC 53 consensus_9219#2 --------------------------------------GCCTTGTCGTGTGTGGAGTGGC 22 consensus_9219#1 TCTGTCCTGGGGCACTCAAGGTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGC 60 consensus_9219#3 ------------------------------------------------------------ consensus_9219#0 AATATGTGACCCAAG-AGAG-GAGGAAGCTCAAGTGCTAAGAT-CAATTTTCGA-TGAAG 109 consensus_9219#2 ATTTTGTGACCCCTGCACAGCGAGGAGGCTCCAGGGCTAGAATGCAATTGTCGAGTCCCG 82 consensus_9219#1 AATATGTGACCCAAG-AGAG-GAGGAAGCTCAAGTGCTAAGAT-CAATTTTCGA-TGAAG 116 consensus_9219#3 ------------------------------------------------------------ consensus_9219#0 AAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGG-TGGGTGAAGCAGGAACG 168 consensus_9219#2 ATCAATTGTTGAGCTCACACGATTATGGTTGGGAACACGCGGACGGGTGACGCAGGAACG 142 consensus_9219#1 AAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGG-TGGGTGAAGCAGGAACG 175 consensus_9219#3 -------------ACCCTGAAATCAT--TTTGATTCACAAAAGCAGTTAAT-CAATAATG 44 * ** ** ** * ** * * * ** ** * consensus_9219#0 -ACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTT--TTACCT 225 consensus_9219#2 CACTTCTTCATTCATCGTACAAGTTTACTGGCCGGAGGTATACACTGACGTT--TTACCT 200 consensus_9219#1 -ACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTT--TTACCT 232 consensus_9219#3 --AGGCCTGGTTTTGGGTCTCAACTTCCTGACGAGACACTTCTGATAGTCTCCATTGTTT 102 * * ** ** * ** *** * ** * * * ** * consensus_9219#0 TGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATA 285 consensus_9219#2 TGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATA 260 consensus_9219#1 TGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATA 292 consensus_9219#3 TACGTTTTAGCTAATAATCAATTGTTTTGCCTTATACCACTATTTCTTCATTTTGTTTTA 162 * * * *** * * * * *** *** ** * ** * ** consensus_9219#0 ACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTA 345 consensus_9219#2 ACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTA 320 consensus_9219#1 ACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTA 352 consensus_9219#3 G-TGAGGAATGGCAATATGTGACCCAAGAGAGGTTTGCTTTGGCGCCG---------TTA 212 *** **** * *** * *** *** * ** * *** consensus_9219#0 ATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTA 405 consensus_9219#2 ATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTA 380 consensus_9219#1 ATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTA 412 consensus_9219#3 GTTTAATACTTTAGGAGGAAGCTCAAGTGCTAAGATCAATTTT---CGATGAAGAAGATT 269 ** * ** * * * ** * ** * * * * * * ** * * * ** * consensus_9219#0 GATAA-GTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGA 464 consensus_9219#2 GATAA-GTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGA 439 consensus_9219#1 GATAA-GTCACAAAGCCATCCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGG 471 consensus_9219#3 GATGATATCAGACGATTAT--AATTTGGAAT---ACNAAGTGNGTG------AAGCAGGA 318 *** * *** * ** * * * ** * ** ** ** ** **** consensus_9219#0 TAAACTACCCAA-TTATCTAAA-GTCAAAAA-GGAAGCACCTAGATAGACTAGGACAAGA 521 consensus_9219#2 TAAACTACCCCA-TTATCTAAAAGTCAAAAA-GGAAGCACCTAGATA------------- 484 consensus_9219#1 ATAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCA--------------------- 510 consensus_9219#3 ACGACT------------------------------------------------------ 324 *** consensus_9219#0 TGGAGANGTACCTAGAGGTTGGAACTGGGTTAGTGNTATAAACACCTGCACAAACTGGAT 581 consensus_9219#2 ------------------------------------------------------------ consensus_9219#1 ------------------------------------------------------------ consensus_9219#3 ------------------------------------------------------------ consensus_9219#0 CAGCATCATAGAGGCATNATTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCG 641 consensus_9219#2 ------------------------------------------------------------ consensus_9219#1 ------------------------------------------------------------ consensus_9219#3 ------------------------------------------------------------ consensus_9219#0 CGTTTCATATTNGCCATTTGATTATGGGTTAAATGATAAGAGGGTCATGANNTTCCTAAA 701 consensus_9219#2 ------------------------------------------------------------ consensus_9219#1 ------------------------------------------------------------ consensus_9219#3 ------------------------------------------------------------ consensus_9219#0 TATGAATT 709 consensus_9219#2 -------- consensus_9219#1 -------- consensus_9219#3 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||