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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 709 fasta sequence
[GAGCCATATTCGGCACGAGGTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC-TTTTGCAGTTGACAAAG-TAGATAAGTCA-CAAAGCCATTCA-TTCTCGAGT-GAAACCTCG-TCGGTTTCTCGT-AAACAGGATAAACTA-CCCAATTATCT-AAAGTC-AAAAAGGAAGCACCTAGATAGACTAGGACAAGATGGAGANGTACCTAGAGGTTGGAACTGGGTTAGTGNTAT-AAACACCTGC-ACAAACTGGATCAGCATCATAGAGGCATNATTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCGCGTTTCATATTNGCCATTTGATTATGGGTT-AAATGATAAGAGGGTCATGANNTTCCTAAAT-ATGAATT]
[+] EMBL CD081610 [GAGCCATATTCGGCACGAGGTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC TTTTGCAGTTGACAAAG TAGATAAGTCA CAAAGCCATTCA TTCTCGAGT GAAACCTCG TCGGTTTCTCGT AACAGGATAAACTA CCCAATTATCT AAAGTC AAAAAGGAAGCACCTAGATAGACTAGGACAAGATGGAGANGTACCTAGAGGTTGGAACTGGGTTAGTGNTAT AAACACCTGC ACAAACTGGATCAGCATCATAGAGGCATNATTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCGCGTTTCATATTNGCCATTTGATTATGGGTT AAATGATAAGAGGGTCATGANNTTCCTAAAT ATGAAT ]
[+] EMBL CD135811 [ GCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAAGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGGTAACGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC TTTTGCAGTTGACAAAG TAGATAAGTCA CAAAGCCATTCA TTCTCGAGT GAAACCTCG TCGGTTTCTCGT AAACAGGATAAACTA CC ]
[-] EMBL CD075433 [ AATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTC TTTTGCAGTTGACAAAG TAGATAAGTCA CAAAGCCATTCA TTCTCGAGT GAAACCTCG TCGGTTTCTCGT AAACAGGATAAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCACCTAGATAGACTAGGACAAGATGGAGAGTTACCTAGAGGTTGGAACTGGGTTAGTGTAATAAAACACCTGCAACAAACTGGATCAGCATCATAGAGGCATATTTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCGCGTTTCATATTGTCCA TTGATTATGGGTTAAAATGATAAGAGGGTCATGA GTTTCTAAATAATGTATT]
[+] EMBL CD135808 [ AAGTTTACTGGCCTGAAAGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAAGTCAACTTGGCTCAACACTAACATTTCATTTAATTGAGTTTCTAAAGGAAAATCATGAACGATTTGCTAAATCTTTTTGCCGTTGACAAAGTTAGATAAATTACCAAAGCCATTCATTTCTCGAGTGGAAACCTCGTTCGGTTCTTCGTAAAACAGATTAAACTA CCCccaat ]
consensusID : consensus_9219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 510 fasta sequence
[TCTGTCCTGGGGCACTCAAGGTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATCCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGGATAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCA]
[+] EMBL CD133132 [TCTGTCCTGGGGCACTCAAGGTCCCTTTCTGACATGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGCGCTAAGATCAATTCTCGATGAAG ]
[+] EMBL CD133150 [ CTGTCCTGGGGCACTCAAGGTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATCCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGGATAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCA]
[+] EMBL CD171339 [ tTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGCAATATGTGACCCAAGAGAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGGTGGGTGAAGCAGGAACGACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAANATCATGAGCGATTNGCT ]
consensusID : consensus_9219#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GCCTTGTCGTGTGTGGAGTGGCATTTTGTGACCCCTGCACAGCGAGGAGGCTCCAGGGCTAGAATGCAATTGTCGAGTCCCGATCAATTGTTGAGCTCACACGATTATGGTTGGGAACACGCGGACGGGTGACGCAGGAACGCACTTCTTCATTCATCGTACAAGTTTACTGGCCGGAGGTATACACTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGATAAACTACCCCATTATCTAAAAGTCAAAAAGGAAGCACCTAGATA]
[+] EMBL CD193276 [GCCTTGTCGTGTGTGGAGTGGCATTTTGTGACCCCTGCACAGCGAGGAGGCTCCAGGGCTAGAATGCAATTGTCGAGTCCCGATCAATTGTTGAGCTCACACGATTATGGTTGGGAACACGCGGACGGGTGACGCAGGAACGCACTTCTTCATTCATCGTACAAGTTTACTGGCCGGAGGTATACACTGACGTTTTACCTTGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATAACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTAATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTAGATAAGTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGATAAACTACCCCATTATCTAAAAGTCAAAAAGGAAGCACCTAGATA]
consensusID : consensus_9219#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[ACCCTGAAATCATTTTGATTCACAAAAGCAGTTAATCAATAATGAGGCCTGGTTTTGGGTCTCAACTTCCTGACGAGACACTTCTGATAGTCTCCATTGTTTTACGTTTTAGCTAATAATCAATTGTTTTGCCTTATACCACTATTTCTTCATTTTGTTTTAGTGAGGAATGGCAATATGTGACCCAAGAGAGGTTTGCTTTGGCGCCGTTAGTTTAATACTTTAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGATTGATGATATCAGACGATTATAATTTGGAATACNAAGTGNGTGAAGCAGGAACGACT]
[+] EMBL CD142665 [ACCCTGAAATCATTTTGATTCACAAAAGCAGTTAATCAATAATGAGGCCTGGTTTTGGGTCTCAACTTCCTGACGAGACACTTCTGATAGTCTCCATTGTTTTACGTTTTAGCTAATAATCAATTGTTTTGCCTTATACCACTATTTCTTCATTTTGTTTTAGTGAGGAATGGCAATATGTGACCCAAGAGAGGTTTGCTTTGGCGCCGTTAGTTTAATACTTTAGGAGGAAGCTCAAGTGCTAAGATCAATTTTCGATGAAGAAGATTGATGATATCAGACGATTATAATTTGGAATACNAAGTGNGTGAAGCAGGAACGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9219#0 -------GAGCCATATTCGGCACGAGGTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGC 53
consensus_9219#2 --------------------------------------GCCTTGTCGTGTGTGGAGTGGC 22
consensus_9219#1 TCTGTCCTGGGGCACTCAAGGTCCCTTTCTGACTTGAAGGCTTGTCGAGTGAGGAATGGC 60
consensus_9219#3 ------------------------------------------------------------
consensus_9219#0 AATATGTGACCCAAG-AGAG-GAGGAAGCTCAAGTGCTAAGAT-CAATTTTCGA-TGAAG 109
consensus_9219#2 ATTTTGTGACCCCTGCACAGCGAGGAGGCTCCAGGGCTAGAATGCAATTGTCGAGTCCCG 82
consensus_9219#1 AATATGTGACCCAAG-AGAG-GAGGAAGCTCAAGTGCTAAGAT-CAATTTTCGA-TGAAG 116
consensus_9219#3 ------------------------------------------------------------
consensus_9219#0 AAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGG-TGGGTGAAGCAGGAACG 168
consensus_9219#2 ATCAATTGTTGAGCTCACACGATTATGGTTGGGAACACGCGGACGGGTGACGCAGGAACG 142
consensus_9219#1 AAGAATTGATGATATCAGACGATTATAATTTGGAATACAAGG-TGGGTGAAGCAGGAACG 175
consensus_9219#3 -------------ACCCTGAAATCAT--TTTGATTCACAAAAGCAGTTAAT-CAATAATG 44
* ** ** ** * ** * * * ** ** *
consensus_9219#0 -ACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTT--TTACCT 225
consensus_9219#2 CACTTCTTCATTCATCGTACAAGTTTACTGGCCGGAGGTATACACTGACGTT--TTACCT 200
consensus_9219#1 -ACTTCTTCATTCATCGTACAAGTTTACTGGCCTGAAGGATATCCTGACGTT--TTACCT 232
consensus_9219#3 --AGGCCTGGTTTTGGGTCTCAACTTCCTGACGAGACACTTCTGATAGTCTCCATTGTTT 102
* * ** ** * ** *** * ** * * * ** *
consensus_9219#0 TGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATA 285
consensus_9219#2 TGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATA 260
consensus_9219#1 TGTATCTCTATGAATTCTTTTTATAATCATCATATCCCATTAAATGTTAAGGAGAAAATA 292
consensus_9219#3 TACGTTTTAGCTAATAATCAATTGTTTTGCCTTATACCACTATTTCTTCATTTTGTTTTA 162
* * * *** * * * * *** *** ** * ** * **
consensus_9219#0 ACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTA 345
consensus_9219#2 ACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTA 320
consensus_9219#1 ACTGAAGAATTAGTGTCTGTTGCTGAAGGTCAACTTGGCTCAGCACTAACATTTCATTTA 352
consensus_9219#3 G-TGAGGAATGGCAATATGTGACCCAAGAGAGGTTTGCTTTGGCGCCG---------TTA 212
*** **** * *** * *** *** * ** * ***
consensus_9219#0 ATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTA 405
consensus_9219#2 ATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTA 380
consensus_9219#1 ATTGAGTATCTAAAGGAAAATCATGAGCGATTTGCTAAGTCTTTTGCAGTTGACAAAGTA 412
consensus_9219#3 GTTTAATACTTTAGGAGGAAGCTCAAGTGCTAAGATCAATTTT---CGATGAAGAAGATT 269
** * ** * * * ** * ** * * * * * * ** * * * ** *
consensus_9219#0 GATAA-GTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGA 464
consensus_9219#2 GATAA-GTCACAAAGCCATTCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGA 439
consensus_9219#1 GATAA-GTCACAAAGCCATCCATTCTCGAGTGAAACCTCGTCGGTTTCTCGTAAACAGGG 471
consensus_9219#3 GATGATATCAGACGATTAT--AATTTGGAAT---ACNAAGTGNGTG------AAGCAGGA 318
*** * *** * ** * * * ** * ** ** ** ** ****
consensus_9219#0 TAAACTACCCAA-TTATCTAAA-GTCAAAAA-GGAAGCACCTAGATAGACTAGGACAAGA 521
consensus_9219#2 TAAACTACCCCA-TTATCTAAAAGTCAAAAA-GGAAGCACCTAGATA------------- 484
consensus_9219#1 ATAACTACCCCAATTATCTAAAAGTCAAAAAAGGAAGCA--------------------- 510
consensus_9219#3 ACGACT------------------------------------------------------ 324
***
consensus_9219#0 TGGAGANGTACCTAGAGGTTGGAACTGGGTTAGTGNTATAAACACCTGCACAAACTGGAT 581
consensus_9219#2 ------------------------------------------------------------
consensus_9219#1 ------------------------------------------------------------
consensus_9219#3 ------------------------------------------------------------
consensus_9219#0 CAGCATCATAGAGGCATNATTAGCTGTGCTTCATTACACACAAGATATTATTTGCTTTCG 641
consensus_9219#2 ------------------------------------------------------------
consensus_9219#1 ------------------------------------------------------------
consensus_9219#3 ------------------------------------------------------------
consensus_9219#0 CGTTTCATATTNGCCATTTGATTATGGGTTAAATGATAAGAGGGTCATGANNTTCCTAAA 701
consensus_9219#2 ------------------------------------------------------------
consensus_9219#1 ------------------------------------------------------------
consensus_9219#3 ------------------------------------------------------------
consensus_9219#0 TATGAATT 709
consensus_9219#2 --------
consensus_9219#1 --------
consensus_9219#3 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||