cluster # 9226

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Schistosoma mansoni
cluster # 9226 cluster # 9226 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9226#0 length = 640 sequences # 4
consensus_9226#1 length = 551 sequences # 2

consensus_9226#2 length = 249 sequences # 2
consensus_9226#3 length = 211 sequences # 1

consensusID : consensus_9226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 640
fasta sequence

                              [GAGGGCCAAAATTCGGCACGAGGAACACCGAAGGAAAGTGATAAAGAAATAGAATCTTTAAAGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTTAGACGACAAATATAAAAGGGCACTCGCCGAGTCAGAAAACATGCGGAAACGTTTGATGAAACAGATAGATGAAGCAAAATTATTCGGTATCCAAAGTTTATGCAAAGATTTACTGGAAGTGGCTGATATTTTAACATCTGCTACTAAATCAGCTCCTCAAGATCAATTAAAAGATGGAGTTAATCCTCCGTTCGCTAATTTGTACCATGGCTTAGTATTGACAGAAAGCCAATTGTTCAAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATTCTTTGTGTAAATGCACATTAAAATTTTTC]

[+] EMBL CD082582             [GAGGGCCAAAATTCGGCACGAGGAACACCGAAGGAAAGTGATAAAGAAATAGAATCTTTAAAGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTTAGACGACAAATATAAAAGGGCACTCGCCGAGTCAGAAAACATGCGGAAACGTTTGATGAAACAGATAGATGAAGCAAAATTATTCGGTATCCAAAGTTTATGCAAAGATTTACTGGAAGTGGCTGATATTTTAACATCTGCTACTAAATCAGCTCCTCAAGATCAATTAAAAGATGGAGTTAATCCTCCGTTCGCTAATTTGTACCATGGCTTAGTATTGACAGAAAGCCAATTGTTCAAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATTCTTTGTGTAAATGCACATTAAAATTTTT ]
[+] EMBL CD129670             [               gaggagtcAACACCGAAGGAAAGTGATTAAGAAATATAATCTTTAAAGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTTAGACGACGAATATAAAAGGGCACTCGCCGAGTCAGAAAACATGCGGAAACGTTTGATGAAACAGATAGATGAAGCAAAATTATTCGGTATCCAAAGTTTATGCAAAGATTTACTGGAAGTGGCTGATATTTTAACATCTGCTACTAAATCAGCTCCTCAAGATCAATTAAAAGATGGAGTTAATCCTCCGTTTGCTAATTT                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD076181             [                        ACACCGAAGGAAAGTGATAAAGAAATAGAATCTTTAAAGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTTAGACGACAAATATAAAAGGGCACTCGCCGAGTCAGAAAACATGCGGAAACGTTTGATGAAACAGATAGATGAAGCAAAATTATTCGGTATCCAAAGTTTATGCAAAGATTTACTGGAAGTGGCTGATATTTTAACATCTGCTACTAAATCAGCTCCTCAAGATCAATTAAAAGATGGAGTTAATCCTCCGTTCGCTAATTTGTACCATGGCTTAGTATTGACAGAAAGCCAATTGTTCAAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATTCTTTGTGTAAATGCACATTAAAATTTTTC]
[-] EMBL CD145999             [                                                                                                                                                                                                                                                                                                              GTACCATGGCTTAGTATTGACAGAAAGCCAATTGTTCAAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAAGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCT                                                                                       ]




>consensus_9226#0
GAGGGCCAAAATTCGGCACGAGGAACACCGAAGGAAAGTGATAAAGAAATAGAATCTTTA
AAGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTTAGACGACAAATATAAAAGG
GCACTCGCCGAGTCAGAAAACATGCGGAAACGTTTGATGAAACAGATAGATGAAGCAAAA
TTATTCGGTATCCAAAGTTTATGCAAAGATTTACTGGAAGTGGCTGATATTTTAACATCT
GCTACTAAATCAGCTCCTCAAGATCAATTAAAAGATGGAGTTAATCCTCCGTTCGCTAAT
TTGTACCATGGCTTAGTATTGACAGAAAGCCAATTGTTCAAGGTTTTCTCCCGTCATAAC
TTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTG
TTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTA
GGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAA
AATAATTTGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATC
TCATGATGATTCTTTGTGTAAATGCACATTAAAATTTTTC

consensusID : consensus_9226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 551
fasta sequence

                              [ACAAATAAAAGCGGCTATAGTAGCTTCTGGTTTTCAAATGTCTTGGCTTAAATTTAAGTATTTCTTTTTTGTTACATATNATTAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATTCTTTGTGTAAATGCACATTAAAATTTTTCCTTCTTAGTAGAATCTTTAAGTTATATCTTTGCATAAGGAAGCTGCCGCGTGATGTTGATGTTTCGTATTCATATTCAAACGTAAATAGGGTTTCAGTAAAATGTCAAACTGTTTAACGATCAAGAGATTCGCTACCTCAAAAGACTTAATGTCGAACAATATATAGG]

[-] EMBL AI975383             [ACAAATAAAAGCGGCTATAGTAGCTTCTGGTTTTCAAATGTCTTGGCTTAAATTTAAGTATTTCTTTTTTGTTACATATNATTAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATTCTTTGTGTAAATGCACATTAAAATTTTTCCTTCTTAGTAGAATCTTTAAGTTATATCTTTGCATAAGGAAGCTGCCGCGTGATGTTGATGTTTCGTATTCATATTCAAACGTAAATAGGGTTTCAGTAAAATGTCAAACTGTTTAACGATCAAGAGATTCGCTACCTCAAAAGACTTAATGTCGAACAATATATAGG]
[-] EMBL CD122682             [                                                                                                                       CAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCCGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAA                                                                                                                                                                                                                                                                          ]




>consensus_9226#1
ACAAATAAAAGCGGCTATAGTAGCTTCTGGTTTTCAAATGTCTTGGCTTAAATTTAAGTA
TTTCTTTTTTGTTACATATNATTAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCC
AGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGA
GGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACCAACTACATGG
ACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGATCTGAAG
TACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATTCTTTGT
GTAAATGCACATTAAAATTTTTCCTTCTTAGTAGAATCTTTAAGTTATATCTTTGCATAA
GGAAGCTGCCGCGTGATGTTGATGTTTCGTATTCATATTCAAACGTAAATAGGGTTTCAG
TAAAATGTCAAACTGTTTAACGATCAAGAGATTCGCTACCTCAAAAGACTTAATGTCGAA
CAATATATAGG

consensusID : consensus_9226#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 249
fasta sequence

                              [AGGAAAAATTTTAATGTGCATTTACACAAAGAATCATCATGAGATAAAGTGTACAACAAACACTATTATCAGGCTTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCCGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGGCCCGCGGC]

[+] EMBL CD075404             [AGGAAAAATTTTAATGTGCATTTACACAAAGAATCATCATGAGATAAAGTGTACAACAAACACTATTATCAGGCTTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCCGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCGG        ]
[-] EMBL CD081580             [ GGAAAAATTTTAATGTGCATTTACACAAAGAATCATCATGAGATAAAGTGTACAACAAACACTATTATCAGGCTTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCT GAAAGGAAAAGAATACAGTCGCCGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCT AGACCGGCCCGCGGC]




>consensus_9226#2
AGGAAAAATTTTAATGTGCATTTACACAAAGAATCATCATGAGATAAAGTGTACAACAAA
CACTATTATCAGGCTTCCCGTCATAACTTAGTCCAGATTTCCCCAGAAGTTGGCGAACAT
TTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGAGGCTGGAAAGGAAAAG
AATACAGTCGCCGTGGTCACAAAAGTAGGTTACCAACTACATGGACGACCTCTGAGACCG
GCCCGCGGC

consensusID : consensus_9226#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [AAGGNTACTTTGGATTGNATCTCAACGNAAATTTAGCACAGAAACCGNGAGGAGTCAACACCGAAGGAAAGTGATAAAGAAATAGAATCTNTAACGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTNAGACGACAAATATAANAGGGTACTCGNCGAGTCAGANAACATGCGGAANCGTTGGATGAAACAGATAGATNAAGCAA]

[+] EMBL SM6391               [AAGGNTACTTTGGATTGNATCTCAACGNAAATTTAGCACAGAAACCGNGAGGAGTCAACACCGAAGGAAAGTGATAAAGAAATAGAATCTNTAACGACTGAAATGCAGAAAATAACTGAAAATTATCATAACTNAGACGACAAATATAANAGGGTACTCGNCGAGTCAGANAACATGCGGAANCGTTGGATGAAACAGATAGATNAAGCAA]




>consensus_9226#3
AAGGNTACTTTGGATTGNATCTCAACGNAAATTTAGCACAGAAACCGNGAGGAGTCAACA
CCGAAGGAAAGTGATAAAGAAATAGAATCTNTAACGACTGAAATGCAGAAAATAACTGAA
AATTATCATAACTNAGACGACAAATATAANAGGGTACTCGNCGAGTCAGANAACATGCGG
AANCGTTGGATGAAACAGATAGATNAAGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9226#0      ------------------------------------------------------------
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      ACAAATAAAAGCGGCTATAGTAGCTTCTGGTTTTCAAATGTCTTGGCTTAAATTTAAGTA 60
consensus_9226#2      ---------AGGAAAAATTTTAATGTGCATTTACACAAAGAATCATCATGAGATAAAGTG 51
                                                                                  

consensus_9226#0      -------------------------------------------GAGGGCCAAAATTCGGC 17
consensus_9226#3      -------AAGGNTACTTTGGATTGNATCT----CAACGNAAATTTAGCACAGAAACCGNG 49
consensus_9226#1      TTTCTTTTTTGTTACATATNATTAGGTTTTCTCCCGTCATAACTTAGTCCAGATTTCCCC 120
consensus_9226#2      TACAACAAACAC----TATTATCAGGCTT---CCCGTCATAACTTAGTCCAGATTTCCCC 104
                                                                    *  ** *   *   

consensus_9226#0      ACGAGG-----AACACCG-AAGGAAAGTGATAAAGAAATAGAATCTTTAAAGAC-TGAAA 70
consensus_9226#3      AGGAGTC----AACACCG-AAGGAAAGTGATAAAGAAATAGAATCTNTAACGAC-TGAAA 103
consensus_9226#1      AGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGA 180
consensus_9226#2      AGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAGCTCCCTTGGA 164
                      *  **      ****     *   ** *  * * ***   *  *    *    * *   *

consensus_9226#0      TGCAGAAAATAACTGAAAATTATCATAACTTAGACGACAAATATAAAAGGGCACTCGCCG 130
consensus_9226#3      TGCAGAAAATAACTGAAAATTATCATAACTNAGACGACAAATATAANAGGGTACTCGNCG 163
consensus_9226#1      GGCTGGAAAGGA--AAAGAATACAGTCGCTGTGGTCACAAA---AGTAGGTTAC-CAACT 234
consensus_9226#2      GGCTGGAAAGGA--AAAGAATACAGTCGCCGTGGTCACAAA---AGTAGGTTAC-CAACT 218
                       ** * ***  *   ** * **   *  *   *   *****   *  ***  ** *  * 

consensus_9226#0      AGTCAGAAAACATGCGGAAACG---TTTGATGAAACAGATAGATGAAGCAAAATTATTCG 187
consensus_9226#3      AGTCAGANAACATGCGGAANCG---TTGGATGAAACAGATAGATNAAGCAA--------- 211
consensus_9226#1      ACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATTTGAT 294
consensus_9226#2      ACATGGACGACCTCTGAGACCGGCCCGCGGC----------------------------- 249
                      *    **  ** *  *  * **      *                               

consensus_9226#0      GTATCCAAAGTTTATGCAAAGATTTACTGGAAGTGGCTGATATTTTAACATCTGCTACTA 247
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      CTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGATGATT 354
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      AATCAGCTCCTCAAGATCAATTAAAAGATGGAGTTAATCCTCCGTTCGCTAATTTGTACC 307
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      CTTTGTGTAAATGCACATTAAAATTTTTCCTTCTTAGTAGAATCTTTAAGTTATATCTTT 414
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      ATGGCTTAGTATTGACAGAAAGCCAATTGTTCAAGGTTTTCTCCCGTCATAACTTAGTCC 367
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      GCATAAGGAAGCTGCCGCGTGATGTTGATGTTTCGTATTCATATTCAAACGTAAATAGGG 474
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      AGATTTCCCCAGAAGTTGGCGAACATTTTGACCCAAATATTCATGAAGCTGTGTTCCAAG 427
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      TTTCAGTAAAATGTCAAACTGTTTAACGATCAAGAGATTCGCTACCTCAAAAGACTTAAT 534
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      CTCCCTTGGAGGCTGGAAAGGAAAAGAATACAGTCGCTGTGGTCACAAAAGTAGGTTACC 487
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      GTCGAACAATATATAGG------------------------------------------- 551
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      AACTACATGGACGACCTCTGAGACCGGCATTTGTTGGTGTGTTTGGACCCTAAAATAATT 547
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      ------------------------------------------------------------
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      TGATCTGAAGTACTCTAGGAAGCCTGATAATAGTGTTTGTTGTACACTTTATCTCATGAT 607
consensus_9226#3      ------------------------------------------------------------
consensus_9226#1      ------------------------------------------------------------
consensus_9226#2      ------------------------------------------------------------
                                                                                  

consensus_9226#0      GATTCTTTGTGTAAATGCACATTAAAATTTTTC 640
consensus_9226#3      ---------------------------------
consensus_9226#1      ---------------------------------
consensus_9226#2      ---------------------------------