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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 858 fasta sequence
[AGCCTTATTCGGCACCGGGGGATTGTACCACATGTAAAAATTCAAAGGGAAAATTTCATTCAAGAACG-TTGATTTCAAATA-TTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTTCACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC-TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACATGGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGG-TG-TT-TAATTTTGATATAATATTATTTT]
[+] EMBL CD081798 [AGCCTTATTCGGCACCGGGGGATTGTACCACATGTAAAAATTCAAAGGGAAAATTTCATTCAAGAACG TTGATTTCAAATA TTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTT ACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACATGGAGAATTAAATCAACTCATCANACTCGTTCATCATTACACATCTTTTTGGNTG TT TAATTTTGATATAATATTATTT ]
[+] EMBL CD081805 [ aggnanAACGNTTGATTTCAAATATTTCCGCTCAAACTGCGAGACGGGTTCTTAAGAACTTTTCACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACATGGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGG TG TTNTAATTNTGATATAATATTATTT ]
[+] EMBL CD137688 [ TGATTTCAAATA TTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTTCACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGACGTGACAATGGTACACATTATTGAGGCACCACGTGCACCTCACATCCATGATATTATTACAATACTTTCCAG ]
[+] EMBL CD167476 [ GTTAAACCTGGTCAAACGGTTGCATTAGTTGGGCCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTGTTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCA ]
[-] EMBL CD075536 [ AACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATTTGGAGGACAGAAACAGAGGATAGCCATTGCCCGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTTTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTTTATGCATTGCGCCACATGGAGAATTAAATCAAAACATCAAACTCGTTCATCATTACACATCTTTTTGG TGTTT TAATTTTGATAGAATTTTATTTT]
[-] EMBL CD075529 [ GGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGAGTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTTTATGCATTGCACCACATGGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGG TGTTT TAATTTTGATATAGGATTA ]
[+] EMBL CD079199 [ GGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCGTCATACCATGGTCCCGATAGTGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACAC TTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGGATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAAACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTATAGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCGTCTATCGACAATTGTCAATGCTGATCTGGTAGTAGTATTACAGGATGGACGTAAGATAGAGTCAGGACCTCCAGCAGCACTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCAt ]
consensusID : consensus_9228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 352 fasta sequence
[CCGACGGCTCACGGAACTTTCACACACTGTT-ACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACACTTCCAGAGCA]
[+] EMBL CD167236 [CCGACGGCTCACGGAACTTTCACACACTGTT ACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACACTTCCAGAGCA]
[+] EMBL CD065786 [ CACGGAACTTTCACACACTGTTAAACCGGTC AACGGTTGCATTAGTTGGGCCTTCTGGTTGTGGGAAATCAACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGGTGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGATTGGTCTTGTTTCACAAGAACCCACTTTGTTCGATCTCACCATAAGAGAGAATATTGCGTATGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAACATCCATGATTTTATTACAACACTTCCAGAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9228#0 AGCCTTATTCGGCACCGGGGGATTGTACCACATGTAAAAATTCAAAGGGAAAATTTCATT 60
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 CAAGAACGTTGATTTCAAATATTCCGCTCAAACTGAGAGACGGGTTCTTAAGAACTTTTC 120
consensus_9228#1 ---------------------------------------CCGACGGCTCACGGAACTTTC 21
** ** * * * ****
consensus_9228#0 ACACACTGTTAAACCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATC 180
consensus_9228#1 ACACACTGTTA--CCTGGTCAAACGGTTGCATTAGTTGGACCTTCTGGTTGTGGGAAATC 79
*********** ***********************************************
consensus_9228#0 AACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGG 240
consensus_9228#1 AACACTGCTTCAGTTAGTATTGAGATTCTACGATCCATTGTATCACGGTTCCGATAATGG 139
************************************************************
consensus_9228#0 TGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGAT 300
consensus_9228#1 TGTGTTTTTCGATGATATCAACATCAGAAATATTGCACCTAGTTGGGTTAGAAAACAGAT 199
************************************************************
consensus_9228#0 TGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTA 360
consensus_9228#1 TGGTCTTGTTTCACAAGAACCCACTTTATTCGATCTCACCATAAGAGAGAATATTGCGTA 259
************************************************************
consensus_9228#0 TGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAA 420
consensus_9228#1 TGGAGACAATAGTCGAGAAGTGACAATGGAAGAGATTATTGAGGCAGCACGTGCAGCTAA 319
************************************************************
consensus_9228#0 CATCCATGATTTTATTACAACACTTCCAGAGCAATATGAAACCAAAGTTGGACAACGTGG 480
consensus_9228#1 CATCCATGATTTTATTACAACACTTCCAGAGCA--------------------------- 352
*********************************
consensus_9228#0 ATCAAAGCTATCTGGAGGACAGAAACAGAGGATAGCCATTGCACGAGCTTTAGTTCGTAA 540
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 ACCTGTTTTGCTTGTGTTGGACGAAGCCACTTCAGCTTTAGACAATGAGAGTGAGCGTAT 600
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 AGTTCAAGAAGCTCTTGATGCTGCCATGGGGTCGAGAACATCATTAGTTGTTGCCCATCG 660
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 TCTATCGACAATTGTCAATGCTGATTTGGTAGTAGTTTTACGGGATGGATGTAAGATAGA 720
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 GTCTGGACCTCCAGCAGCATTGCTCGCTAAGAAAGGAGCTTTCTATGCATTGCACCACAT 780
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 GGAGAATTAAATCAACTCATCAAACTCGTTCATCATTACACATCTTTTTGGTGTTTAATT 840
consensus_9228#1 ------------------------------------------------------------
consensus_9228#0 TTGATATAATATTATTTT 858
consensus_9228#1 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||