These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 720 fasta sequence [CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGG-TTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG-GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT-ACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCACTACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAACCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC] [+] EMBL CD069716 [CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGGTTTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAAGCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGT ] [+] EMBL CD065795 [ CACTTTTGAGG TTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACGCCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGNCTAACTCTAGTGAAAGTT ] [+] EMBL CD065803 [ CACTTTTGAGG TTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAACTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACGCCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTAGTGAAA ] [+] EMBL CD065823 [ TTTTGAGGTTTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACCAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAAAATTTGATGTGGCTAGCTGAGCGAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTTCGCC ] [+] EMBL CD167512 [ ACTGTGTCGTTGTACAAATCAGACAGACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCACT ] [-] EMBL CD065857 [ TCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACGCCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAATAACCGTGGCCTAACTATAGT ] [-] EMBL CD167506 [ AAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCACTACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAACCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC] [-] EMBL CD069738 [ CGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCA TTTACAGTCTCCAGGACGAAAGCATTACTTCTAACAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTCCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTGGTGAAAGTTGTTTCTATAATTCTCACTACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGACGGAACCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTA ] consensusID : consensus_9229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 129 fasta sequence [AAACCATTAACGTAATTCTCTCCACTGGCTTCACGTGGTTCCATCGTATGAATACATAGAGATGAGTTCATGGAAAAATTTGGAACACTTTGACACCTCAGTGTTCTGTGTCATAACCTCAACTCAGCT] [+] EMBL CD097452 [AAACCATTAACGTAATTCTCTCCACTGGCTTCACGTGGTTCCATCGTATGAATACATAGAGATGAGTTCATGGAAAAATTTGGAACACTTTGACACCTCAGTGTTCTGTGTCATAACCTCAACTCAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9229#0 CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGGTTCCGAAACC 60 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 GAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCAT 120 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 ACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACA 180 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 AACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAGGAAGCT 240 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 GTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGAT 300 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 GTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCA 360 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 CCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATT 420 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 ACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACT 480 consensus_9229#1 ------------------------------------------------------------ consensus_9229#0 TTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAA 540 consensus_9229#1 -------------------AAACCATTAACGTAATTCTCTCCACTGGCTTCAC--GTGGT 39 *** * ** *** * * *** ***** *** consensus_9229#0 TCGAAAGACAACATAATACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCAC 600 consensus_9229#1 TCCATCGTATG---AATACATAGAGATGAGTTCATGGAAAA--ATTTGGAACACTTTGAC 94 ** * * ***** * * * * * **** *** * * * * ** consensus_9229#0 TACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAA 660 consensus_9229#1 -ACCTCA---GTGTTCTGTGTCATAACCTCAACTCAGCT--------------------- 129 ** *** ****** * * * * ****** ** consensus_9229#0 CCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC 720 consensus_9229#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||