These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1170 fasta sequence [GGATATGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATTAGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCACAACCGACTCGATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTATCCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATCGAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATCTACTATGAAACATCAATATTTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCAACAACAACCAAATCCACAGTCCCTGTCAAACTTCATAGGATCTCGTCTAACATTGAATCCTAATACTGCTGCAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATGTAAGTTTTCCATATTTGATTTGATGGCATTTTTAGATCCACACGAAAATCATTGAGTCTTTTTACGAGCCAGTTAATGGTATTT] [-] EMBL CD157071 [GGATATGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATTAGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCAC ] [-] EMBL CD157116 [ TGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATTAGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCAC ] [+] EMBL CD094463 [ TAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCACAACCGACTCGATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTATCCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATCGAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATCTACTATGAAACATCAATATTTTAGTCAGGCAACANATCAGAGTACA ] [+] EMBL CD120020 [ CTTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTA ] [-] EMBL CD157325 [ TTCCCAGAGACGTTTACCAGTGTTCACTTTCCCAAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACCAGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCA TATAGTCATGCTCAGATTATATATCCAC ] [-] EMBL CD094656 [ AATTCTAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAATGTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTCTAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCGCAACCGACTCGATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTATCCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATCGAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATCTACTATGAAACATCAATATTTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCAACAAC ] [-] EMBL CD064947 [ gTCATTTGCATCAGCAGCAGCATTCTTTAATCCATCCGCAACAGACATCAGCATCTCCACGTGATAGCCGAGGGCAATCTACTATGAAGCATCAATATNTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCAACAACAACCAAATCCACAGTCCCTGTCAAACTTCATAGGATCTCGTCTAACATTGAATCCTAATACTGCTGCAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATGTAAGTTTTCCATATTTGATTTGATGGCATTTTTAGATCCACACGAAAATCATTGAGTCTTTTTACGAGCCAGTTAATGGTATTT] consensusID : consensus_9232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TGAATCCTAATACTGCTGCGAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATACTTAAATTGCAAGCCAACTCGGCCACCACCCTATGAAATAGCTTTGGCTTTAAAATATCCTCAAAACGTC] [+] EMBL CD112831 [TGAATCCTAATACTGCTGCGAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGACTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAACAGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACTCAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTCCACTTGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAATTCCACAATACTTAAATTGCAAGCCAACTCGGCCACCACCCTATGAAATAGCTTTGGCTTTAAAATATCCTCAAAACGTC] consensusID : consensus_9232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CGTTTTGAGGATATTTTAAAGCCAAAGCTATTTCATAGGGTGGTGGCCGAGTTGGCTTGCAATTTAAGTCTATTGAATTGTGAAAGAGGGATGAGGGAATAAGAAAGATAACAAGAAAAAAAAGTAAAAAAATTTTCAGATTTCTCGTCTTGAGTTACAAATATTCTCCATCGTCTTAAATGTGTGAGGAATAAATAAAAGTAGGGAAGGTACGACTTGATATTTGAAAAATTAGTTACAGAGACAATTCGTAGAGAGGACAAATTACACAGCAACCACTATTGTAAGTTACTCATCAGTAAACGAGACTTCAGAGAAACTCATATAATCCGGTTTTGGTAACCGGGGGCTGGTACCGTTATAGCGGTTTTATACACAC] [+] EMBL CD191684 [CGTTTTGAGGATATTTTAAAGCCAAAGCTATTTCATAGGGTGGTGGCCGAGTTGGCTTGCAATTTAAGTCTATTGAATTGTGAAAGAGGGATGAGGGAATAAGAAAGATAACAAGAAAAAAAAGTAAAAAAATTTTCAGATTTCTCGTCTTGAGTTACAAATATTCTCCATCGTCTTAAATGTGTGAGGAATAAATAAAAGTAGGGAAGGTACGACTTGATATTTGAAAAATTAGTTACAGAGACAATTCGTAGAGAGGACAAATTACACAGCAACCACTATTGTAAGTTACTCATCAGTAAACGAGACTTCAGAGAAACTCATATAATCCGGTTTTGGTAACCGGGGGCTGGTACCGTTATAGCGGTTTTATACACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9232#0 GGATATGTTTACTCGACCATTACTAGGCGCACAATCTGTCGAAGATGCTCGCAAACTATT 60 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 AGCCCTGAGTGTAGGTAGTAAACGTTCTTCCCAGAGACGTTTACCAGTGTTCACTTTCCC 120 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 AAATCACTTTGATTACAATAATACTCATAATGTTGCTCAGTCTTTGTTCATTACGTCACC 180 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 AGTTCGACCATATGCTGGTATTGGGTTTGGACATTTGAAATCGCAACATTACAACAATTC 240 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 TAATGTATCATCGTCTATAGGATCATCTTATCAAGTAAATAATAATACTATCATGCAAAT 300 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 GTCAAATAACAGCACATCTAAACCATCATCTACCACTAATGCTACTATTTCCACATGTTC 360 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 TAATCATTTGCACCATCATCATTATAGTCATGCTCAGATTATATATCCACAACCGACTCG 420 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 ATGTTATTCCACTCCTATCGGTACATCAGGCAGTAAAAGTCTACTGTTGCATAATCTTAT 480 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 CCCAATACCATCTCGTTTAGCTACTAATATGAAAGATAGTGGGAATAGCAATTCTACATC 540 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 GAATCAAATGTATGCTATGCTACCAAATCAAAGAGATCCTTCTCATTTGCATCAGCAGCA 600 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 GCATTCTTTAATCCATCACCAACAGACATCAGCATCTCCACCTGATAACCGAGGCCAATC 660 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 TACTATGAAACATCAATATTTTAGTCAGGCAACAAATCAGAATACAAATCATCAATACCA 720 consensus_9232#1 ------------------------------------------------------------ consensus_9232#2 ------------------------------------------------------------ consensus_9232#0 ACAACAACCAAATCCACAGTCCCTGTCAAACTTCATAGGATCTCGTCTAACATTGAATCC 780 consensus_9232#1 -----------------------------------------------------TGAATCC 7 consensus_9232#2 -------------------------------------------------------CGTTT 5 * consensus_9232#0 TAATACTGCTGC-AGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGA 839 consensus_9232#1 TAATACTGCTGCGAGTGCTACATCCATCTTGTCGTGGTATTTCCCTGCAGCAACAGATGA 67 consensus_9232#2 TGAGGATATTTT-AAAGCCAAAGCTATTTCATAG-GGTGGTGGCCG--------AGTTGG 55 * * * * * ** * * * ** * * * *** * ** ** ** consensus_9232#0 CTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAAC 899 consensus_9232#1 CTTGTCCATATCGGTCTACTCATTTATCTGGTGAAGGTGCCTATCCCCCATATCAACAAC 127 consensus_9232#2 CTTG-CAATTTAAGTCTATTGAATTGTGAAAGAGGGATGAGGG-----AATAAGAAAGAT 109 **** * ** * ***** * * ** * * ** *** ** * consensus_9232#0 AGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACT 959 consensus_9232#1 AGGCAACGGTACAATCAGGTCATTTTAGAGAACAATCACCATCGCAACAACATCAGCACT 187 consensus_9232#2 AACAAGAAAAAAAAGTAAAAAAATTTTCAGATTTCTCGTCTT--GAGTTACA--AATATT 165 * * * ** * * *** *** ** * * * *** * * * consensus_9232#0 CAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTC--CACT 1017 consensus_9232#1 CAGTTTCATTCAATTTTGATGAGAATTATTTATATCCTACTGTAAATACACTTC--CACT 245 consensus_9232#2 CTCCATCGTCTTAAATGTGTGAGGAATAAATAAAAG-TAGGGAAGGTACGACTTGATATT 224 * ** * * * **** * ** ** * ** * * *** * * * consensus_9232#0 TGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAAT 1077 consensus_9232#1 TGGTGGTTCAATGCTGTCTATACCTCGCAATTATCGGCAGTCTGTCATACAAAGAATAAT 305 consensus_9232#2 TGAAAAATTAGTTACAGAGACAATTCGTAGAGAG-GACAAATTA-CACAGCAACCACTAT 282 ** * * * * * *** * * * ** * ** * ** * ** consensus_9232#0 TCCACAATGTAAGTTTTCCATATTTGATTTGATGGCATTTTTAGATCCACACGAAAATCA 1137 consensus_9232#1 TCCACAATACTTAAATTGCAAGCCAACTCGGCCACCACCCTATGAAATA-GCTTTGGCTT 364 consensus_9232#2 TGTAAGTTACTCATCAGTAAACGAGACTTCAGAGAAACTCATATAATCCGGTTTTGGTAA 342 * * * * * * * consensus_9232#0 TTGAG---TCTTTTTACGA-GCCAGTTAATGGTATTT 1170 consensus_9232#1 TAAAA---TATCCTCAAAACGTC-------------- 384 consensus_9232#2 CCGGGGGCTGGTACCGTTATAGCGGTTTTATACACAC 379 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||