These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1092 fasta sequence [TCCAGGCCAANAATTTGGCACGAGGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCAATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAATGTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTNTTATTGGCTGAAATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTAC-AACAAATAGATTTATTTTAGTCACTTCACATTATGGTGTCGTACCGTTTCTTAGTTCTTTAATTTTGGTAAAGCTTGAAATTATCATTTTTCATCGTATGAAATAGCCAGCATTCTTCCACTTATAAAAGAAAAAAACTACCAATCAAATTAGAATTATTTCCATCTTTCTGTAGAAATTCAATAGGCTTGATGGAAATTGTATAATTTTGTGTTTTCTCTTGGAAATATTTTCAAAAGGATGATATTTGGTCAATGTGAACAACTATTTGTTTCTTCTTTATGCAATGTAATACTTTTAAGACATTTGATCAGATTTAGCTAAATAGGATTTCCCCTTTTAAAAAACTTTCCATTTCTTAATAAGTGTACTCCAAGGTGAGTTTGTCATCAAAAAACTCGTATAT] [+] EMBL CD079640 [TCCAGGCCAANAATTTGGCACGAGGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCAATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAATGTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTNTTATTGGCTGAAATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTAC AACAAATAGATTTATTTTAGTCACTTCACATTATGGTGTCGTACC ] [-] EMBL CD178667 [ GGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCA ] [-] EMBL CD155791 [ TTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAACTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAA ] [-] EMBL CD073902 [ GGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGANAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCAATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAATGTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTTTTATTGGCTGAAATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTACAAACAAATAGATTTATTTTAGTCACTTCACATTATGGTGTCGTACCGTTTCTTAGTTCTTTAATTTTGGTAAAGCTTGAAATTATCATTTTTCATCGTATGAAATAGCCAGCATTCTTCCACTTATAAAAGAAAAAAACTACCAATCAAATTAGAATTATTTCCATCTTTCTGTAGAAATTCAATAGGCTTGATGGAAATTGTATAATTTTGTGTTTTCTCTTGGAAATATTTTCAAAAGGATGATATTTGGTCAATGTGAACAACTATTTGTTTCTTCTTTATGCAATGTAATACTTTTAAGACATTTGATCAGATTTAGCTAAATAGGATTTCCCCTTTTAAAAAACTTTCCATTTCTTAATAAGTGTACTCCAAGGTGAGTTTGTCATCAAAAAACTCGTATAT] consensusID : consensus_9234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [GAATTCGGCACGAGGCGGCACGAGGAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGACTATTTCAATATGGGACCAATAGTACTCATCAACACCCTACTTCACTGTCATTATTATATGCAATATGGNGGTCAAACAGATAATTCTGCTTCTTAATTATACAAAGTAGGTTTTATTGGCTGAAATAAAATCGATATGTGAAGAATGAGAAGCTAACACAAANAATTATTTTAGCCCTACACTAGGNTGCGACCGTTCTAGTTTTAATTGGAAAGTTGATTTCATTTTACGTTGAAGCCA] [+] EMBL CD077491 [GAATTCGGCACGAGGCGGCACGAGGAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGACTATTTCAATATGGGACCAATAGTACTCATCAACACCCTACTTCACTGTCATTATTATATGCAATATGGNGGTCAAACAGATAATTCTGCTTCTTAATTATACAAAGTAGGTTTTATTGGCTGAAATAAAATCGATATGTGAAGAATGAGAAGCTAACACAAANAATTATTTTAGCCCTACACTAGGNTGCGACCGTTCTAGTTTTAATTGGAAAGTTGATTTCATTTTACGTTGAAGCCA] consensusID : consensus_9234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 465 fasta sequence [GACCCAAAGCGCGCGAAATGCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTC] [+] EMBL CD162913 [GACCCAAAGCGCGCGAAATGCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTT ] [-] EMBL CD162703 [ ACCCAAAGCGCGCGAAATGCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAGTCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTC] consensusID : consensus_9234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [TAACTCGTTTTGTCCTCAATTATTTTGGCTTATAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTNAAAGCAGTTTCGCCCAGATATTTTTCGCCAATAATGATGTTATCTCACTTATTCCTGATCTATCACCTATCACAGTTATGTTTTTATACAATTCATGTTCCATTTGTTGATGAACTTTATATAGAAA] [+] EMBL CD179663 [TAACTCGTTTTGTCCTCAATTATTTTGGCTTATAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTNAAAGCAGTTTCGCCCAGATATTTTTCGCCAATAATGATGTTATCTCACTTATTCCTGATCTATCACCTATCACAGTTATGTTTTTATACAATTCATGTTCCATTTGTTGATGAACTTTATATAGAAA] consensusID : consensus_9234#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [GTTTTCTAAATTTCCTGATTACATCCAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACAT] [+] EMBL CD077978 [GTTTTCTAAATTTCCTGATTACATCCAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9234#0 TCCAGGCCAANAATTTGGCACGAGGGAGGATGGTCGGCGACGCACATGGGATGGTATTTT 60 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 AGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGT 120 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 AAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAG 180 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 TGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGA 240 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 -----------------------------------------GACCCAAAGCGCGCGAAAT 19 consensus_9234#3 --------------------------------------------------------TAAC 4 consensus_9234#0 AACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGC 300 consensus_9234#1 ------------------------------------------------------GAATTC 6 consensus_9234#4 -----------------------------------------------GTTTTCTAAATTT 13 consensus_9234#2 GCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTAT 79 consensus_9234#3 TCGTTTTGTCCTCAATTATTTTGGCTTATAGGATGGTCGGCGACGCACATGGGATGGTAT 64 * consensus_9234#0 TGTTCAAGA-GGTTTTGGAAGAATGTGGCTATAAAATC--AATGAAGATTCCTTGCATTT 357 consensus_9234#1 GGCACGAGGCGGCACGAGGAGAATGTGGCTATAAAATC--AATGAAGATTCCTTGCATTT 64 consensus_9234#4 CCTGATTACATCCAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCT 73 consensus_9234#2 TTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCT 139 consensus_9234#3 TTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCT 124 *** ** ** ** * * * ** ** * * * consensus_9234#0 AATCAA-----TTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATAC 412 consensus_9234#1 AATCAA-----TTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATAC 119 consensus_9234#4 AGTAAAGCAGTTTCGCCCAGTTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATAC 133 consensus_9234#2 AGTAAAGCAGTTTCGCCCAGTT---GTAT---ACTATTCAAAGTTGAGAAAACTTGGAAT 193 consensus_9234#3 AGTNAAA----GCAGTTTCGCCCAGATATT--TTTCGCCAATAATGATGTTATCTCACTT 178 * * ** * * * * *** * * consensus_9234#0 TATGCTGAAGTGCAT--GAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAG 470 consensus_9234#1 TATGCTGAAGTGCAT--GAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAG 177 consensus_9234#4 TATGCTGAAGTGCAT--GAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACAT---- 187 consensus_9234#2 TAT-CCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCG 252 consensus_9234#3 ATTCCTGATCTATCACCTATCACAGTTATGTTTTTA-TACAATTCATGTTCCATTTGTTG 237 * * ** * * * * * * * * consensus_9234#0 AAGGTGA--ATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCA 528 consensus_9234#1 AAGGTGA--ATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGA-CTATTTCA 234 consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 AAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAA 312 consensus_9234#3 ATGAACTTTATATAGAAA------------------------------------------ 255 consensus_9234#0 ATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAAT 588 consensus_9234#1 ATATGGGACCAATAGTACTCATCAACACCCTACTTCACTGTCATTATTATATGCAATA-T 293 consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 AATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCT 372 consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 GTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTNTTATTGGCTGA 648 consensus_9234#1 GGNGGTCAAACAGATAATTCTGCTTC--TTAATTATACAAAGT-AGGTTTTATTGGCTGA 350 consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 TGCATTTAATCAATTCGTTTTATTCA--AGTGTTGGATTAGCAGGCACTGAAGTAACTTT 430 consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 AATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTACAACAAATAGATTTATTTTAGTC 708 consensus_9234#1 AATAAAATCGATATGTG---AAGAATG-AGAAGCT---AACACAAANAATTATTTTAGCC 403 consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 A-TACTATGCTGAAGTGCATGAAAATCAAAAAGTTC------------------------ 465 consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 ACTTCACATTATGGTGTCGTACCGTTTCTTAGTTCTTTAATTTTGGTAAAGCTTGAAATT 768 consensus_9234#1 ---CTACACTAGGNTGCG--ACCGTTC--TAGT--TTTAATT---GGAAAG-TTGA---T 447 consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 ATCATTTTTCATCGTATGAAATAGCCAGCATTCTTCCACTTATAAAAGAAAAAAACTACC 828 consensus_9234#1 TTCATTTTACGTTGAAGCCA---------------------------------------- 467 consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 AATCAAATTAGAATTATTTCCATCTTTCTGTAGAAATTCAATAGGCTTGATGGAAATTGT 888 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 ATAATTTTGTGTTTTCTCTTGGAAATATTTTCAAAAGGATGATATTTGGTCAATGTGAAC 948 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 AACTATTTGTTTCTTCTTTATGCAATGTAATACTTTTAAGACATTTGATCAGATTTAGCT 1008 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 AAATAGGATTTCCCCTTTTAAAAAACTTTCCATTTCTTAATAAGTGTACTCCAAGGTGAG 1068 consensus_9234#1 ------------------------------------------------------------ consensus_9234#4 ------------------------------------------------------------ consensus_9234#2 ------------------------------------------------------------ consensus_9234#3 ------------------------------------------------------------ consensus_9234#0 TTTGTCATCAAAAAACTCGTATAT 1092 consensus_9234#1 ------------------------ consensus_9234#4 ------------------------ consensus_9234#2 ------------------------ consensus_9234#3 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||