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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1092 fasta sequence
[TCCAGGCCAANAATTTGGCACGAGGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCAATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAATGTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTNTTATTGGCTGAAATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTAC-AACAAATAGATTTATTTTAGTCACTTCACATTATGGTGTCGTACCGTTTCTTAGTTCTTTAATTTTGGTAAAGCTTGAAATTATCATTTTTCATCGTATGAAATAGCCAGCATTCTTCCACTTATAAAAGAAAAAAACTACCAATCAAATTAGAATTATTTCCATCTTTCTGTAGAAATTCAATAGGCTTGATGGAAATTGTATAATTTTGTGTTTTCTCTTGGAAATATTTTCAAAAGGATGATATTTGGTCAATGTGAACAACTATTTGTTTCTTCTTTATGCAATGTAATACTTTTAAGACATTTGATCAGATTTAGCTAAATAGGATTTCCCCTTTTAAAAAACTTTCCATTTCTTAATAAGTGTACTCCAAGGTGAGTTTGTCATCAAAAAACTCGTATAT]
[+] EMBL CD079640 [TCCAGGCCAANAATTTGGCACGAGGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCAATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAATGTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTNTTATTGGCTGAAATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTAC AACAAATAGATTTATTTTAGTCACTTCACATTATGGTGTCGTACC ]
[-] EMBL CD178667 [ GGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCA ]
[-] EMBL CD155791 [ TTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAACTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAA ]
[-] EMBL CD073902 [ GGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGANAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCAATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAATGTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTTTTATTGGCTGAAATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTACAAACAAATAGATTTATTTTAGTCACTTCACATTATGGTGTCGTACCGTTTCTTAGTTCTTTAATTTTGGTAAAGCTTGAAATTATCATTTTTCATCGTATGAAATAGCCAGCATTCTTCCACTTATAAAAGAAAAAAACTACCAATCAAATTAGAATTATTTCCATCTTTCTGTAGAAATTCAATAGGCTTGATGGAAATTGTATAATTTTGTGTTTTCTCTTGGAAATATTTTCAAAAGGATGATATTTGGTCAATGTGAACAACTATTTGTTTCTTCTTTATGCAATGTAATACTTTTAAGACATTTGATCAGATTTAGCTAAATAGGATTTCCCCTTTTAAAAAACTTTCCATTTCTTAATAAGTGTACTCCAAGGTGAGTTTGTCATCAAAAAACTCGTATAT]
consensusID : consensus_9234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[GAATTCGGCACGAGGCGGCACGAGGAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGACTATTTCAATATGGGACCAATAGTACTCATCAACACCCTACTTCACTGTCATTATTATATGCAATATGGNGGTCAAACAGATAATTCTGCTTCTTAATTATACAAAGTAGGTTTTATTGGCTGAAATAAAATCGATATGTGAAGAATGAGAAGCTAACACAAANAATTATTTTAGCCCTACACTAGGNTGCGACCGTTCTAGTTTTAATTGGAAAGTTGATTTCATTTTACGTTGAAGCCA]
[+] EMBL CD077491 [GAATTCGGCACGAGGCGGCACGAGGAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAGAAGGTGAATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGACTATTTCAATATGGGACCAATAGTACTCATCAACACCCTACTTCACTGTCATTATTATATGCAATATGGNGGTCAAACAGATAATTCTGCTTCTTAATTATACAAAGTAGGTTTTATTGGCTGAAATAAAATCGATATGTGAAGAATGAGAAGCTAACACAAANAATTATTTTAGCCCTACACTAGGNTGCGACCGTTCTAGTTTTAATTGGAAAGTTGATTTCATTTTACGTTGAAGCCA]
consensusID : consensus_9234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 465 fasta sequence
[GACCCAAAGCGCGCGAAATGCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTC]
[+] EMBL CD162913 [GACCCAAAGCGCGCGAAATGCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAATCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTT ]
[-] EMBL CD162703 [ ACCCAAAGCGCGCGAAATGCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAAAATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCTTGCATTTAGTCAATTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTC]
consensusID : consensus_9234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[TAACTCGTTTTGTCCTCAATTATTTTGGCTTATAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTNAAAGCAGTTTCGCCCAGATATTTTTCGCCAATAATGATGTTATCTCACTTATTCCTGATCTATCACCTATCACAGTTATGTTTTTATACAATTCATGTTCCATTTGTTGATGAACTTTATATAGAAA]
[+] EMBL CD179663 [TAACTCGTTTTGTCCTCAATTATTTTGGCTTATAGGATGGTCGGCGACGCACATGGGATGGTATTTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTNAAAGCAGTTTCGCCCAGATATTTTTCGCCAATAATGATGTTATCTCACTTATTCCTGATCTATCACCTATCACAGTTATGTTTTTATACAATTCATGTTCCATTTGTTGATGAACTTTATATAGAAA]
consensusID : consensus_9234#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence
[GTTTTCTAAATTTCCTGATTACATCCAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACAT]
[+] EMBL CD077978 [GTTTTCTAAATTTCCTGATTACATCCAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGTAAAGCAGTTTCGCCCAGTTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATACTATGCTGAAGTGCATGAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9234#0 TCCAGGCCAANAATTTGGCACGAGGGAGGATGGTCGGCGACGCACATGGGATGGTATTTT 60
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 AGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCTAGT 120
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 AAAGCAGTTTCGCCCAGTTGTATACTATTCAAAGTTGAGAAAACTTGGAATTATCCGAAG 180
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 TGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCGAAATTGGGGA 240
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 -----------------------------------------GACCCAAAGCGCGCGAAAT 19
consensus_9234#3 --------------------------------------------------------TAAC 4
consensus_9234#0 AACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAAACTAATCCAAAATTATATGC 300
consensus_9234#1 ------------------------------------------------------GAATTC 6
consensus_9234#4 -----------------------------------------------GTTTTCTAAATTT 13
consensus_9234#2 GCAGTGTCCAATGTTGCTTTAGAAAGAGGAGGATGGTCGGCGACGCACATGGGATGGTAT 79
consensus_9234#3 TCGTTTTGTCCTCAATTATTTTGGCTTATAGGATGGTCGGCGACGCACATGGGATGGTAT 64
*
consensus_9234#0 TGTTCAAGA-GGTTTTGGAAGAATGTGGCTATAAAATC--AATGAAGATTCCTTGCATTT 357
consensus_9234#1 GGCACGAGGCGGCACGAGGAGAATGTGGCTATAAAATC--AATGAAGATTCCTTGCATTT 64
consensus_9234#4 CCTGATTACATCCAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCT 73
consensus_9234#2 TTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCT 139
consensus_9234#3 TTTAGCACATGATAGTGTTTCAATACTTCTGTATCATTCTGAGAAGAAGTCGTTACTTCT 124
*** ** ** ** * * * ** ** * * *
consensus_9234#0 AATCAA-----TTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATAC 412
consensus_9234#1 AATCAA-----TTCGTTTTATTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATAC 119
consensus_9234#4 AGTAAAGCAGTTTCGCCCAGTTCAAGTGTTGGATTAGCAGGCACTGAAGTAACTTTATAC 133
consensus_9234#2 AGTAAAGCAGTTTCGCCCAGTT---GTAT---ACTATTCAAAGTTGAGAAAACTTGGAAT 193
consensus_9234#3 AGTNAAA----GCAGTTTCGCCCAGATATT--TTTCGCCAATAATGATGTTATCTCACTT 178
* * ** * * * * *** * *
consensus_9234#0 TATGCTGAAGTGCAT--GAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAG 470
consensus_9234#1 TATGCTGAAGTGCAT--GAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACATGAAG 177
consensus_9234#4 TATGCTGAAGTGCAT--GAAAATCAAAAAGTTCCTAACGCCGGTGGTGGATTACAT---- 187
consensus_9234#2 TAT-CCGAAGTGTAACAGATAGTCCAGTTGAAAGCAATGAGATTGATCTCCCATCTAGCG 252
consensus_9234#3 ATTCCTGATCTATCACCTATCACAGTTATGTTTTTA-TACAATTCATGTTCCATTTGTTG 237
* * ** * * * * * * * *
consensus_9234#0 AAGGTGA--ATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGAACTATTTCA 528
consensus_9234#1 AAGGTGA--ATATATTGAAGTGATAGAATGGCCTGTTTCACGAATTGAAGA-CTATTTCA 234
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 AAATTGGGGAAACATTAGAACTATGTGCTGGAATAATCGATGGAGTCCAGACTAATCCAA 312
consensus_9234#3 ATGAACTTTATATAGAAA------------------------------------------ 255
consensus_9234#0 ATATGGTACCAATAGTACTCATCAACAACCTACTTCACTGTCATTATTATATGCAATAAT 588
consensus_9234#1 ATATGGGACCAATAGTACTCATCAACACCCTACTTCACTGTCATTATTATATGCAATA-T 293
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 AATTATATGCTGTTCAAGAGGTTTTGGAAGAATGTGGCTATAAAATCAATGAAGATTCCT 372
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 GTGGTTCAAACAGAATATTCTGCCTTCTTTATTTATACAAAGTTAGTTNTTATTGGCTGA 648
consensus_9234#1 GGNGGTCAAACAGATAATTCTGCTTC--TTAATTATACAAAGT-AGGTTTTATTGGCTGA 350
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 TGCATTTAATCAATTCGTTTTATTCA--AGTGTTGGATTAGCAGGCACTGAAGTAACTTT 430
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 AATTAAATTCGTATATGTGAAGGAATGTAGAAGCTTACAACAAATAGATTTATTTTAGTC 708
consensus_9234#1 AATAAAATCGATATGTG---AAGAATG-AGAAGCT---AACACAAANAATTATTTTAGCC 403
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 A-TACTATGCTGAAGTGCATGAAAATCAAAAAGTTC------------------------ 465
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 ACTTCACATTATGGTGTCGTACCGTTTCTTAGTTCTTTAATTTTGGTAAAGCTTGAAATT 768
consensus_9234#1 ---CTACACTAGGNTGCG--ACCGTTC--TAGT--TTTAATT---GGAAAG-TTGA---T 447
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 ATCATTTTTCATCGTATGAAATAGCCAGCATTCTTCCACTTATAAAAGAAAAAAACTACC 828
consensus_9234#1 TTCATTTTACGTTGAAGCCA---------------------------------------- 467
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 AATCAAATTAGAATTATTTCCATCTTTCTGTAGAAATTCAATAGGCTTGATGGAAATTGT 888
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 ATAATTTTGTGTTTTCTCTTGGAAATATTTTCAAAAGGATGATATTTGGTCAATGTGAAC 948
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 AACTATTTGTTTCTTCTTTATGCAATGTAATACTTTTAAGACATTTGATCAGATTTAGCT 1008
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 AAATAGGATTTCCCCTTTTAAAAAACTTTCCATTTCTTAATAAGTGTACTCCAAGGTGAG 1068
consensus_9234#1 ------------------------------------------------------------
consensus_9234#4 ------------------------------------------------------------
consensus_9234#2 ------------------------------------------------------------
consensus_9234#3 ------------------------------------------------------------
consensus_9234#0 TTTGTCATCAAAAAACTCGTATAT 1092
consensus_9234#1 ------------------------
consensus_9234#4 ------------------------
consensus_9234#2 ------------------------
consensus_9234#3 ------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||