These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence [GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACGCTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGCTTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAACCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCGAACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCG] [+] EMBL CD131330 [GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACGCTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGCTTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAACCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCGAACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTT ] [+] EMBL CD198540 [ GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAACCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCG] consensusID : consensus_9238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 439 fasta sequence [GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATCTTATGTCACATTTCTCTTT] [+] EMBL CD198636 [GGCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATGGTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATCTTATGTCACATTTCTCTTT] [-] EMBL CD142392 [ GCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCAGGTTCCCCTC ] [-] EMBL CD142432 [ GCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTGCTCCACTCTTGGTATGAACCCAGGTTCCCCTC ] [-] EMBL CD198497 [ GCCATGGTATCCAAATGTCTGGTCCTCACGACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGCCCAATACCAAGCCATTATTTCTCCACTCTTGGTATGAACCCA ] [-] EMBL CD199999 [ ACGGATATTTGAAATGAATAAGCGATTACGACAGCGCAGCGACGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCT ] consensusID : consensus_9238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 350 fasta sequence [GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGA] [+] EMBL CD133729 [GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAGA] [+] EMBL CD185532 [GCAACACTTACTCTTGCCTTTTTGACAGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAGTATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTTTCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCTGATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGACGACTGTGATAGTTTGTGGTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTTGACAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9238#0 GACGACTCCATTTTGGTTGGCTCGTTGAAGTCTGTCTATTCGGTTGTCCGTTTACCAACG 60 consensus_9238#1 ------------------------------------------------------------ consensus_9238#2 ------------------------------------------------------------ consensus_9238#0 CTGGATCCCAATATCTCGGATTATCCGGAGAAGTTTTTGAATTTTCCACATGCAGTTGGC 120 consensus_9238#1 ------------------------------------------------------------ consensus_9238#2 ------------------------------------------------------------ consensus_9238#0 TTCCCTTCCAAAACTCCAATGAACAGGATGCCTTCTGCGGTTGCGAGTGGTGGGTCTCAA 180 consensus_9238#1 ------------------------------------------------------------ consensus_9238#2 ------------------------------------------------------------ consensus_9238#0 CCTCTCCATATGCAACCAGTTCACTCAGGCCCGGTGATATCAAGTTCTCTAAATTTGCCG 240 consensus_9238#1 ------------------------------------------------------------ consensus_9238#2 ------------------------------------------------------------ consensus_9238#0 AACACCCTCCCACCTGGAATGCTCCATTCGGGCCATGGTATCCAAATGTCTGGTCCTCAC 300 consensus_9238#1 ------------------------------GGCCATGGTATCCAAATGTCTGGTCCTCAC 30 consensus_9238#2 ----------------------------------GCAACACTTACTCTTGCCTTTTTGAC 26 * * * * * ** consensus_9238#0 GACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGC-CCAATACCAAGCCATTATTTCTC 359 consensus_9238#1 GACCGTGAGCCTGCTACACCAGCTTCAGGTTCTGGC-CCAATACCAAGCCATTATTTCTC 89 consensus_9238#2 AGAAGAGGGTCCAAAAAGTTACACTATCGGGCGGACGCTCATTCCCCGTTATTTTCGTAG 86 * * * * * * * * * * * * ** ** * *** * consensus_9238#0 CACTCTTGGTA-TGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATG--- 415 consensus_9238#1 CACTCTTGGTA-TGAACCCAGGTTCCCCTCATCCTATCCCAAATATGGTCCCACATG--- 145 consensus_9238#2 TATATTTGAAAGTGGATGCGGTGAGCTTTATTACAACCTTAGATTGAACCATGAATATTT 146 * *** * ** * * * * * * * * * * ** * ** consensus_9238#0 --GTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCT 473 consensus_9238#1 --GTCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCT 203 consensus_9238#2 TCATCATCCTAGCCAATTTCATCACCATCCACTACTATCGTTGAATCGACTACCACATCT 206 ********************************************************* consensus_9238#0 GATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGA 533 consensus_9238#1 GATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGA 263 consensus_9238#2 GATAGGTCAACCAGAGCTACGGATATTTGAAATGAATAAGCGATTACAACAGCGCAGCGA 266 ************************************************************ consensus_9238#0 CG------------------------------------------ACTGTGATAGTTTGTG 551 consensus_9238#1 CGTATGTCTGTACATGTTTTCCAAGACACTAACCTATTTTTAGGACTGTGATAGTTTGTG 323 consensus_9238#2 CG------------------------------------------ACTGTGATAGTTTGTG 284 ** **************** consensus_9238#0 GTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTT 611 consensus_9238#1 GTGGGAGTCATTTGCCACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTT 383 consensus_9238#2 GTGGGAGTCATTTGCTACTGACTTTTTTGAAGATGACGCAACACTTACTCTTGCCTTTTT 344 *************** ******************************************** consensus_9238#0 GACAGAAGAGGGTCCAAAAAGTTACACTATCG------------------------ 643 consensus_9238#1 GACAGAAGAGGGTCCAAAAAGTTACAGTAAGCCTATCTTATGTCACATTTCTCTTT 439 consensus_9238#2 GACAGA-------------------------------------------------- 350 ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||