These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1206 fasta sequence [TGGTACAGCAACATTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGATCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCA-GGCTGCTGAGTGTTTAGACGGNGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGGCAAGAGAATGGCATAGCAATTAGATCCCTTCTTGGTCCATTACTAGCAGATTGCTTCATAGCCAGTCTAGAAAACAACCAACTTAAAATACTTATAGACAACTTCCACTTGTGTAAAAGATATCTGCTTCCCCTTCCATCTTTTCCATAGACTTTCTACTCCCAACTGGTTTGTTTCTATCTCTATAATCATCCTAATTACATTTTAATTTCAACATTTTATCTTATCATGCTGAACCATCCGTTCTCAATTATAAATTCCCTATTTATCTTCATGATGAATACTTAAATCCTTAACAATAAAACTACTATTAGCTTCGCTGACTAAAAAAATTCTTTAGTAGCTATGTTTATTCTTACTCACTGTTATCATGTTTAACAAAATCTTACTAACATTATTATTGTAATTGCTATCATCCTGAAAAGTAAGTATACATATTTGCGACTGTACAGCTTTGAAAATGAATTCACCAAAAATAAAACTCTT] [+] EMBL CD069991 [TGGTACAGCAACATTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGATCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACCACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCTATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCA ] [+] EMBL CD070028 [TGGTACA CAACAGTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGATCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACCACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCTATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTA ] [+] EMBL CD081124 [ gaggCGCTCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCT AACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCA GGCTGCTGAGTGTTTAGACGGNGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGGCAAGAGAATGGCATA ] [-] EMBL CD069999 [ AAGT GACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTG ACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCACGGCTGCT ] [-] EMBL CD070037 [ TCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACAAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCA GGCTGCT ] [-] EMBL CD074946 [ ACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGGCAAGAGAATGGCATAGCAATTAGATCCCTTCTTGGTCCATTACTAGCAGATTGCTTCATAGCCAGTCTAGAAAACAACCAACTTAAAATACTTATAGACAACTTCCACTTGTGTAAAAGATATCTGCTTCCCCTTCCATCTTTTCCATAGACTTTCTACTCCCAACTGGTTTGTTTCTATCTCTATAATCATCCTAATTACATTTTAATTTCAACATTTTATCTTATCATGCTGAACCATCCGTTCTCAATTATAAATTCCCTATTTATCTTCATGATGAATACTTAAATCCTTAACAATAAAACTACTATTAGCTTCGCTGACTAAAAAAATTCTTTAGTAGCTATGTTTATTCTTACTCACTGTTATCATGTTTAACAAAATCTTACTAACATTATTATTGTAATTGCTATCATCCTGAAAAGTAAGTATACATATTTGCGACTGTACAGCTTTGAAAATGAATTCACCAAAAATAAAACTCTT] consensusID : consensus_9245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 700 fasta sequence [GAGTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTCCATCATTCACAGGCGGTGCCAGCTCTCTATCCACTACCAAACACAATGAAAATGCTGATGATTCATCATTTTCAGATCTTGAAATAATTGGTCGGTTA] [-] EMBL CD124842 [GAGTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTCCATCATTCACAGGCGGTGC ] [-] EMBL CD186657 [ CGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTC ] [-] EMBL CD186163 [ GAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTCCATCATTCACAGGCGGTGCCAGCTCTCTATCCACTACCAAACACAATGAAAATGCTGATGATTCATCATTTTCAGATCTTGAAATAATTGGTCGGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9245#0 TGGTACAGCAACATTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGA 60 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 TCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATT 120 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 CTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAG 180 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 GGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAA 240 consensus_9245#1 ----GAGT-GGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAA 55 **** *************************************************** consensus_9245#0 CACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTG 300 consensus_9245#1 CACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTG 115 ************************************************************ consensus_9245#0 TGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAA 360 consensus_9245#1 TGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAA 175 ************************************************************ consensus_9245#0 TCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTG 420 consensus_9245#1 TCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTG 235 ************************************************************ consensus_9245#0 CTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGC 480 consensus_9245#1 CTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGC 295 ************************************************************ consensus_9245#0 CAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAAT 540 consensus_9245#1 CAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAAT 355 ************************************************************ consensus_9245#0 TTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTT 600 consensus_9245#1 TTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTT 415 ************************************************************ consensus_9245#0 CAGTATCTTCAGGCTGCTGAGTGTTTAGACGGNGCAATAATAATCACCACACCTCAGGAA 660 consensus_9245#1 CAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAA 475 ******************************** *************************** consensus_9245#0 GTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGG 720 consensus_9245#1 GTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTT-TGTCGGAAACTATCAATCCCAAT 534 ************************* ** * * * * * ** * consensus_9245#0 CAAGAGAATGGCATAGCAATTAGATCCCTTCTTG-GTCCA--TTACTAGCAGATTGCTTC 777 consensus_9245#1 CTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCC 594 * * * * ** * * * * ** ** ***** ** * * ** * * * consensus_9245#0 ATAGCCAGTCTAGAAAACAACCAACTTAAAATACTTATAGACAACTTCCACTTGTGTAAA 837 consensus_9245#1 ATTATTTCCATCATTCACAGGCGGTGCCAGCTCTCTAT---CCACTACCAAACACAATGA 651 ** * *** * * * *** * *** *** * consensus_9245#0 AGATATCTGCTTCCCCTTCCATCTTTTCCATAGACTTTCTACTCCCAACTGGTTTGTTTC 897 consensus_9245#1 AAATG-CTGATGA----TTCATCATTTTC--AGATCTTGAAAT---AATTGGTCGGTTA- 700 * ** *** * * **** *** * *** ** * * ** **** *** consensus_9245#0 TATCTCTATAATCATCCTAATTACATTTTAATTTCAACATTTTATCTTATCATGCTGAAC 957 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 CATCCGTTCTCAATTATAAATTCCCTATTTATCTTCATGATGAATACTTAAATCCTTAAC 1017 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 AATAAAACTACTATTAGCTTCGCTGACTAAAAAAATTCTTTAGTAGCTATGTTTATTCTT 1077 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 ACTCACTGTTATCATGTTTAACAAAATCTTACTAACATTATTATTGTAATTGCTATCATC 1137 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 CTGAAAAGTAAGTATACATATTTGCGACTGTACAGCTTTGAAAATGAATTCACCAAAAAT 1197 consensus_9245#1 ------------------------------------------------------------ consensus_9245#0 AAAACTCTT 1206 consensus_9245#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||