These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 852 fasta sequence [TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACTATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAAACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAACGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTTTTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTAC-AAACATTATGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGGCTGTGAATAATTGTACAGTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACACTTTTTCCTATTTGTTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTATACAAATGTTTGCTGTCAATTACACGT] [-] EMBL CD197177 [TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGC ] [+] EMBL AA566184 [ GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCAC ] [+] EMBL BF936756 [ CTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACTATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAAACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAACGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTTTTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTAC AAACATTATGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGG ] [+] EMBL BF440140 [ AAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAANCTGTGTCTTCGAAACTATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGG AATAAATTTTATCAACTATTG AAANCC AANCCCATCAACATATCA ] [+] EMBL CD144103 [ TTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTATCAACTATTGAAAAACCAAAACCCATCAACATATCAATA TTTGTGTATAGAAAAATAAACGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATT AGTGTTTTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTAACCTACAAAACATTATGTATGTATACATCATACAAATA ] [-] EMBL AA999510 [ ATTATGTATGTATACATCATACAAATATGGTCCCAAGTACACCAAGGCTGTGAATAATTGTACAGTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACACTTTTTCCTATTTGTTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTATACAAATGTTTGCTGTCAATTACACGT] consensusID : consensus_9247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 305 fasta sequence [TCCGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCA-TTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACACC] [-] EMBL BG932075 [TCCGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCA TTATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATGTACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAACACC] [+] EMBL SMAA14107 [ AGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACTATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACAAAATG CAAAAATAACTATCAAAAATAACTCATTGTAATTCATTGAATGCATTTATGTATCAATA ] consensusID : consensus_9247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACANAATGAAAAAATAACTATAAAAATAACTCATCGTAAT] [+] EMBL CD077919 [CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAGGACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTTGAGATTGAAGACAACAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAATGTCCATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATCGTTGACANAATGAAAAAATAACTATAAAAATAACTCATCGTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9247#0 -----------TTATTTCACAATGTGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAG 49 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 CGGCCACGAATTCGGCACGAGGGATGAAGAACAACTTGCTCTTCCGAAGTTGTAGAGAAG 60 consensus_9247#0 GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTT 109 consensus_9247#1 ----------------------------------------------------------TC 2 consensus_9247#2 GACGAAGAAGAACTAGAAGAAAACAAAACTCATCCATGTTGAAAGCAGAATCATACTTTT 120 * consensus_9247#0 GAGATTGAAGACAA---CAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAAT 166 consensus_9247#1 CGGATTGACGGGGTTTCCAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAAT 62 consensus_9247#2 GAGATTGAAGACAA---CAAGAATGTTCACTACATTTCAGTAAGTTCACTAAATGAAAAT 177 ****** * ******************************************* consensus_9247#0 GTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATC 226 consensus_9247#1 GTCCATATAAAACGATCAACATTGATTTGCTTTTTTATCTGTGATACTTTTTGTTTAATC 122 consensus_9247#2 GTCCATATAAAACGATCAACATTGATTCGCTTTTTTATCTGTGATACTTTTTGTTTAATC 237 *************************** ******************************** consensus_9247#0 GTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATT 286 consensus_9247#1 GTTGACAAAATGAAAAAAATAACTATAAAAAATAACTCATTGTAATTCATTGAATTCATT 182 consensus_9247#2 GTTGACANAATGAAAAAA-TAACTATAAAAA-TAACTCATCGTAAT-------------- 281 ******* ********** ************ ******** ***** consensus_9247#0 ATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATG 346 consensus_9247#1 ATGTATCAATAATCACTATTATTTACCGTTAAATGACAGTTCACCATGTGCCTTTCAATG 242 consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 TACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAAC 406 consensus_9247#1 TACAGCTATTAATTTCTCTTGTTATAATTAATGTATGTTTAAAAACTGTGTCTTCGAAAC 302 consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 TATGAATACTTATACACTTATAAAAAAAATTTAATATTTCCTGTAAGGAAATAAATTTTA 466 consensus_9247#1 ACC--------------------------------------------------------- 305 consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 TCAACTATTGAAAAACCAAAACCCATCAACATATCAATATTTTGTGTATAGAAAAATAAA 526 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 CGGTGAACGAATCTACGTGATACTGTTTTTTCAATGTTCAATATTCAAATATTAAGTGTT 586 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 TTTCTCTTTAATAATATTTATCAACTACTGTATTCAAAATTGTGTATTTATTATAATTTA 646 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 ACCTACAAACATTATGTATGTATACATCATACAAATATGGTCCCCAGTACATCAAGGCTG 706 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 TGAATAATTGTACAGTTTCAATACTTTTATTTTTCATGTAACTGGTAATTTGTGTCTACA 766 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 CTTTTTCCTATTTGTTGCTGTGTTTAAATGTATTATTTTACATAAATATGTTAACATTAT 826 consensus_9247#1 ------------------------------------------------------------ consensus_9247#2 ------------------------------------------------------------ consensus_9247#0 ACAAATGTTTGCTGTCAATTACACGT 852 consensus_9247#1 -------------------------- consensus_9247#2 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||