cluster # 9250

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Schistosoma mansoni
cluster # 9250 cluster # 9250 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9250#0 length = 982 sequences # 8

consensus_9250#1 length = 373 sequences # 1

consensusID : consensus_9250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 982
fasta sequence

                              [TTTATGTATTTAAATGTTGATGCTAACTAGTTTATTAGTCTAAGTTTAACTAAATTTTATGCTGACTGACTTGAACATCGATAGAGATGATGGGATGTATCTATTTTGGAAATGCGTAAATGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTAGGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCATGTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCACTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAAGTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTCTGAGTGTCGAGTCAAAAGATAGATGGTGTCTAGAAGGCTTAATTTTGTTGACCTTTTATTTATCGTTAATGTTTCTATTACGCAATTGCAGCATCAGTCGCCTAAGTATGAAGCAGTAGACTGCGCAAAATTGTTTCCAGGCTACCCGGGTTTCCATTGTTTGTGTTCTATGTAATGTCTTTGGTTTGGTAAGTGTAAGCTTGACTCATCTAGCCGGATTGCGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGCCTCGCATTCTAATAGAGCCTGACTCTGGTCAGGTGTCAGAAGGATGCTACATTAAAAGGAGTGAATTTGTGGAGGTAATTTTGCTTCTCAAATAGCTCCTACATTGTTTGTTCTCTATAGGGTCTTCTGTGTTTGTGTAGAATGTGTGTACGGTTCTAGTTTCTAACAGTGGTAGATTAGAATAAACAGTAGTCATTGA-GTTTCCCATCTCGGAGTTTG-GCAGTAGCATGTACTTATGTTTGTTACAAGTCTCTGTGTCGGG]

[+] EMBL CD092430             [TTTATGTATTTAAATGTTGATGCTAACTAGTTTATTAGTCTAAGTTTAACTAAATTTTATGCTGACTGACTTGAACATCGATAGAGATGATGGGATGTATCTATTTTGGAAATGCGTAAATGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTAGGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCATGTTCAGGTGTTGACTGTGGGTTGATCTCATCGGGATGAATTGTCAAATGAGATCGCAGCACTGAATGTAACGAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD186720             [               GTTGATGCTAACTAGTTTATTAGTCTAAGTTTAACTAAATTTTATGCTGACTGACTTGAACATCGATAGAGATGATGGGATGTATCTATTTTGGAAATGCGTAAATGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTAGGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCATGTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCACTGAATGTTACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAAGTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD095260             [                                                                                                                                                                                                                                                                    TTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCACTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAAGTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTCTGAGTGTCGAGTCAAAAGATAGATGGTGTCTAGAAGGCTTAATTTTGTTGACCTTTTATTTATCGTTAATGTTTCTATTACGCAATTGCAGCATCAGTCGCCTAAGTATGAAGCAGTAGACTGCGCAAAATTGTTTCCAGGCTACCCGGGTTTCCATTGTTTGTGTTCTATGTAATGTCTTTGGTTTGGTAAGTGTAAGCTTGACTCATCTAGCCGGATTGCGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGCCTCGCATTCTAATAGAGCCTGACCCTG                                                                                                                                                                                                                                             ]
[+] EMBL CD145838             [                                                                                                                                                                                                                                                                                                                                                                             CGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTCTGAGTGTCGAGTCAAAAGATAGATGGTGTCTAGAAGGCTTAATTTTGTTGACCTTTTATTTATCGTTAATGTTTCTATTACGCAGTTGCAGCATCAGTCGCCTAAGTATGAAGTAGTAGACTGCGCAAAATTGTTTCCAGGCTACCCGGGTTTCCACTGTTTGTGTTCTATGTAATGTCTTTGGTTTGG                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD136874             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCTATGTAATGTCTTTGGTTTGGTAAGTGTAAGCTTGACTCATCTAGCCGGATTGCGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGCCTCGCATTCTAATAGAGCCTGACTCTGGTCAGGTGTCAGAAGGATGCTACATTAAAAGGAGTGAATTTGTGGAGGTAATTTTGCTTCTCAAATAGCTCCTACATTGTTTGTTCTCTATAGGGTCTTCTGTGTTTGTGTAGAATGTGTGTACGGTTCTAGTTTCTAACAGTGGTAGATTAGAATAAACAGTAGTCATTGA                                                                 ]
[-] EMBL CD152904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGTAAGTGTAAGCTTGACTCATCTAGCCGGATTGCGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGCCTCGCATTCTAATAGAGCCTGACTCTGGTCAGGTGTCAGAAGGATGCTACATTAAAAGGAGTGAATTTGTGGAGGTAATTTTGCTTCTCAAATAGATCATACATTGTTTGTTCTCTATAGGGTCTTCTGTGTTTGCGTAGAATGTGTGTACGGTTCTAGTTTCTAACAGTGGTAGATTAGAATAAACAGTAGTCATTAC GTTTCCCATCTCGGAGTTTG GCAGTAGCATGTACTTATGTTTGTTACAAGTCTCTGTGTCGGG]
[+] EMBL CD152701             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGATTGCGTAGTCGTGCACTAATTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGCCTCGCATTCTAATAGAGCCTGACTCTGGTCAGGTGTCANAAGGATGTTACATTAAAAGGAGTGAATTTGTGGAGG                                                                                                                                                                                             ]
[-] EMBL CD152597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATTGCGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGCCTCGCATTCCAATAGAGCCTGACTCTGGTCAGGTGTCAGAAGGATGTTACATTAAAAGGAGTGAATTTGTGGAGGTAATTTTGCTTCTCAAATAGCTCCTACATTGTTCGTTCTCTATAGGGTCTTCTGTGTTTGTGTAGAATGTGTGTACGGTTCTAGTTTCTAACAGTGGTAGATTAGAATAAACAGTAGTCATTGACGTTTCCCATCTCGGAGTTTGTGCAGTAGCATGTACTTATGTT                      ]




>consensus_9250#0
TTTATGTATTTAAATGTTGATGCTAACTAGTTTATTAGTCTAAGTTTAACTAAATTTTAT
GCTGACTGACTTGAACATCGATAGAGATGATGGGATGTATCTATTTTGGAAATGCGTAAA
TGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTA
GGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCAT
GTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCA
CTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAA
GTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTT
CGACAATGCACGTCAGTTCTGAGTGTCGAGTCAAAAGATAGATGGTGTCTAGAAGGCTTA
ATTTTGTTGACCTTTTATTTATCGTTAATGTTTCTATTACGCAATTGCAGCATCAGTCGC
CTAAGTATGAAGCAGTAGACTGCGCAAAATTGTTTCCAGGCTACCCGGGTTTCCATTGTT
TGTGTTCTATGTAATGTCTTTGGTTTGGTAAGTGTAAGCTTGACTCATCTAGCCGGATTG
CGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGC
CTCGCATTCTAATAGAGCCTGACTCTGGTCAGGTGTCAGAAGGATGCTACATTAAAAGGA
GTGAATTTGTGGAGGTAATTTTGCTTCTCAAATAGCTCCTACATTGTTTGTTCTCTATAG
GGTCTTCTGTGTTTGTGTAGAATGTGTGTACGGTTCTAGTTTCTAACAGTGGTAGATTAG
AATAAACAGTAGTCATTGAGTTTCCCATCTCGGAGTTTGGCAGTAGCATGTACTTATGTT
TGTTACAAGTCTCTGTGTCGGG

consensusID : consensus_9250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [GGATGTTTCTATTTTGGAAATGCGTAAATGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTAGGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCATGTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCACTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAAGTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTCTGAGCGTCGAGTCAACGCAGCTGGGT]

[+] EMBL CD059746             [GGATGTTTCTATTTTGGAAATGCGTAAATGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTAGGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCATGTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCACTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAAGTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTCTGAGCGTCGAGTCAACGCAGCTGGGT]




>consensus_9250#1
GGATGTTTCTATTTTGGAAATGCGTAAATGCTATATTCCATCGAATAAAGATCAGACTGG
AGTTTGTCTATGAGGACAGTTTGTTGTAGGTTGCCAACAAAGGACAAGTGCTTGGCATAG
TGTTTCTAGGTTGATGTGTCGGTTTCATGTTCAGGTGTTGACTGTGGGTTGATCTCTTCG
GGATGAATTGTCAAATGAGATCGCAGCACTGAATGTAACGAAGTATCATGGATATATATA
CAGATTGCATGTATGAATGTCGAAACAAGTCAGCGATCACAATGATGCGTTGGGTAGGGT
CTGTTGTGTTGGGATAAAGTGGTTGTTTCGACAATGCACGTCAGTTCTGAGCGTCGAGTC
AACGCAGCTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9250#0      TTTATGTATTTAAATGTTGATGCTAACTAGTTTATTAGTCTAAGTTTAACTAAATTTTAT 60
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      GCTGACTGACTTGAACATCGATAGAGATGATGGGATGTATCTATTTTGGAAATGCGTAAA 120
consensus_9250#1      --------------------------------GGATGTTTCTATTTTGGAAATGCGTAAA 28
                                                      ****** *********************

consensus_9250#0      TGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTA 180
consensus_9250#1      TGCTATATTCCATCGAATAAAGATCAGACTGGAGTTTGTCTATGAGGACAGTTTGTTGTA 88
                      ************************************************************

consensus_9250#0      GGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCAT 240
consensus_9250#1      GGTTGCCAACAAAGGACAAGTGCTTGGCATAGTGTTTCTAGGTTGATGTGTCGGTTTCAT 148
                      ************************************************************

consensus_9250#0      GTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCA 300
consensus_9250#1      GTTCAGGTGTTGACTGTGGGTTGATCTCTTCGGGATGAATTGTCAAATGAGATCGCAGCA 208
                      ************************************************************

consensus_9250#0      CTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAA 360
consensus_9250#1      CTGAATGTAACGAAGTATCATGGATATATATACAGATTGCATGTATGAATGTCGAAACAA 268
                      ************************************************************

consensus_9250#0      GTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTT 420
consensus_9250#1      GTCAGCGATCACAATGATGCGTTGGGTAGGGTCTGTTGTGTTGGGATAAAGTGGTTGTTT 328
                      ************************************************************

consensus_9250#0      CGACAATGCACGTCAGTTCTGAGTGTCGAGTCAAAAGATAGATGGTGTCTAGAAGGCTTA 480
consensus_9250#1      CGACAATGCACGTCAGTTCTGAGCGTCGAGTCAACG--CAGCTGG-GT------------ 373
                      *********************** **********     ** *** **            

consensus_9250#0      ATTTTGTTGACCTTTTATTTATCGTTAATGTTTCTATTACGCAATTGCAGCATCAGTCGC 540
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      CTAAGTATGAAGCAGTAGACTGCGCAAAATTGTTTCCAGGCTACCCGGGTTTCCATTGTT 600
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      TGTGTTCTATGTAATGTCTTTGGTTTGGTAAGTGTAAGCTTGACTCATCTAGCCGGATTG 660
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      CGTAGTCGTGCACTAGTTGCGAGCAGTTTTGTTAGGTTTAGAAATGTGGTTGTAATTCGC 720
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      CTCGCATTCTAATAGAGCCTGACTCTGGTCAGGTGTCAGAAGGATGCTACATTAAAAGGA 780
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      GTGAATTTGTGGAGGTAATTTTGCTTCTCAAATAGCTCCTACATTGTTTGTTCTCTATAG 840
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      GGTCTTCTGTGTTTGTGTAGAATGTGTGTACGGTTCTAGTTTCTAACAGTGGTAGATTAG 900
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      AATAAACAGTAGTCATTGAGTTTCCCATCTCGGAGTTTGGCAGTAGCATGTACTTATGTT 960
consensus_9250#1      ------------------------------------------------------------
                                                                                  

consensus_9250#0      TGTTACAAGTCTCTGTGTCGGG 982
consensus_9250#1      ----------------------