These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 506 fasta sequence [CGAGAGTTCAC-TCGCTC-ACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTT-AGCCTCCTGCGTCCCTCCATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATGG] [+] EMBL CD087814 [CGAGAGTTCACATCGCTCGACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTT AGCCTCCTGCGTCCCTCCATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATG ] [+] EMBL CD087786 [ GAGAGTTCAC TCGCTC ACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTT AGCCTCCTGCGTCCCTCCATTGCTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGNCCTTAGAACGCTCTCCTATCACGCGAACTAATGGTCGCATCCATG ] [+] EMBL CD087921 [ GAGAGTTCAC TCGCTC ACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTACGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTACTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCAGACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTTNAGCCTCCTGCGTCCCTTCATTGCTCAAACGC ] [-] EMBL CD087943 [ AAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGCCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCT TCCCACAGCATCATGctatg ] [-] EMBL CD087875 [ TCAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCATCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATGG] [-] EMBL CD087893 [ CAACCTGTTATCCATCGTCTACGCCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGACCTAATGGTCGCATCCATGG] [-] EMBL CD087807 [ AGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCACTCCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTATCACGCGAACTAAAGGTtagta ] consensusID : consensus_9256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [CCATCGTTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACGCCTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTATCACTCGACCTTACGGTCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA] [-] EMBL CD087648 [CCATCGTTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACGCCTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAACCTTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCACTTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTATCACTCGACCTTACGGTCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA] consensusID : consensus_9256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGATTTGCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTATCCTCCTGCGTCCCCCCATGGCTCAAACGGTGAGGAGGTGGTACAGGAATCTCTACCCGTTGTCCATCGCCTACGCCTTTCGGCCTCGGCTTAGGTCCCGACTAACCCTGAGCG] [+] EMBL CD163575 [TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAGAGGCTTTTCTTGGCAGTGTGGAATCAGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGATTTGCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTATCCTCCTGCGTCCCCCCATGGCTCAAACGGTGAGGAGGTGGTACAGGAATCTCTACCCGTTGTCCATCGCCTACGCCTTTCGGCCTCGGCTTAGGTCCCGACTAACCCTGAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9256#0 CGAGAGTTCACTCGCTCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTGCGGTA 60 consensus_9256#1 ------------------------------------------------------------ consensus_9256#2 ------------------------------------------------------------ consensus_9256#0 CGGGTAGTTAAGTACTCACTAGAAGCTTTTCTCGGCAGTGTGACATCAGACGCTTCGCTA 120 consensus_9256#1 ------------------------------------------------------------ consensus_9256#2 ------------------------------------------------------------ consensus_9256#0 CTAAATTTCGCTCCCCATCACAGCTTGTCCTTAAAGTGAAAAGCATTTGACTCTTCACCA 180 consensus_9256#1 ------------------------------------------------------------ consensus_9256#2 ------------------------------------------------------------ consensus_9256#0 GACTTACTGCTTGGACATTCTAATCCAACAGAATGCACATCTTAGCCTCCTGCGTCCCTC 240 consensus_9256#1 -----------------------------------------------------------C 1 consensus_9256#2 ------------------------------------------------------------ consensus_9256#0 CATTG--CTCAAACGCACTTAACTAGTACAGGAATCTCAACCTGTTATCCATCGTCTACG 298 consensus_9256#1 CATCG--TTCAAACATGATTAACTAGTACAGGAATATCAACCTGTTATCCATCGCCTACG 59 consensus_9256#2 --TCGGTTTGCGGTACGGGCACCTCTCACCTCGCTAG-AGGCTTTTCTTGGCAGTGTGGA 57 * * * * ** ** * * ** ** * * * consensus_9256#0 CCTCTCGGCCTCGACTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAAC 358 consensus_9256#1 CCTTGCGGCCTCGGCTTAGGTCCCGACTAACCCTGGGAGGACGAGCCTTCCCCAGGAAAC 119 consensus_9256#2 ATCAGGAACTTCGGTACTCTATTTCCCTCGCCATCACAGCTCCGCCTTTCGGCAAGCGGA 117 * *** ** ** * ** * * *** ** * consensus_9256#0 CTTAGTCATTCGGTGGATAGGATTCTCACCTATCTTTCGCTACTCATACCGGCATTCTCA 418 consensus_9256#1 CTTAGTCATTCGGTGGATCAGATTCTCACTGATCTTTCGCTACTCATACCGGCATTCTCA 179 consensus_9256#2 TTTGCCTACTTGCCAGCCTAACTGCTTGGACGCCCACAACCAGTCGCGCGCTTGCCCTAT 177 ** * * * * * ** * * * ** * ** consensus_9256#0 CTTCTAAGCGCTCCACAAGTCCTCACGATCTTGCTTCACCGCCCTTAGAACGCTCTCCTA 478 consensus_9256#1 CTTCTAAGCGCTCCACAAGTCCTTGCGATCTTGCTTCGTTGCCCTTAGAACGCTCTCCTA 239 consensus_9256#2 CCTCCT-GCGTCCCCCCATGGCTCA-AACGGTGAGGAGGTGGTACAGGAATCTCTACCCG 235 * ** *** ** * * ** * ** * *** ** consensus_9256#0 TCACGCGAC-CTAATGG-TCGCATCCATGG--------------------------- 506 consensus_9256#1 TCACTCGAC-CTTACGG-TCGAATCCACAATTTCGGTAACATGCTTAGCCCCGGTA- 293 consensus_9256#2 TTGTCCATCGCCTACGCCTTTCGGCCTCGGCTTAGGT--CCCGACTAACCCTGAGCG 290 * * * * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||