These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 452 fasta sequence [TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATG-AAAATAAAAATG-TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTTTTCAAAATCACATTTACAATCCAACGTTCCCAAG] [+] EMBL CD145146 [TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATG AAAATAAAAATG TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTTTTCAAAATCACATTTACAATCCAACGTTCCCAAG] [-] EMBL CD140497 [ AGGAACTGATTCCCAATAATTGATATAAATGCCAAGTCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAATATACG AAAATAGAAATG TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACG ] [-] EMBL CD140490 [ AGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATG AAAATAAAAATG TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACG ] [-] EMBL CD140577 [ AGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATGCAAAATAAAAATGCTATATCAAAGTCTAGCATCTTTAAATATACGCCTCACGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGT ] consensusID : consensus_9257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 379 fasta sequence [AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCATTATTGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCACCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACGGGTAAGCCCAGGTCAAATCTGCCACCACG] [+] EMBL CD186543 [AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCATTATTGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCACCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACGGGTAAGCCCAGGTCAAATCTGCCACCAC ] [-] EMBL CD098059 [ ACTCCAAGTTAATTGCACCACGAACTTCGCCATTATTGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCACCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACAGGTAAGCCCAGGTCAAATCTGCCACCACG] consensusID : consensus_9257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [AATGCCACTCAAGGTCGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTGTGTATAAACTCAAACCAACTTATCGAAAAGGTGGCGACTTCAGTTTCAGCCTTTGTTGAAGCCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTAACTTGGAGTTTATGGTTCACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACTTGGGAACGTTGGATTGTAAATGTGATTTTGAA] [+] EMBL CD187014 [AATGCCACTCAAGGTCGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTGTGTATAAACTCAAACCAACTTATCGAAAAGGTGGCGACTTCAGTTTCAGCCTTTGTTGAAGCCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTAACTTGGAGTTTATGGTTCACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACTTGGGAACGTTGGATTGTAAATGTGATTTTGAA] consensusID : consensus_9257#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 196 fasta sequence [TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTTGTGGGGGCGTTGTGTTTCAGCTTTATTTCATACAATTTTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT] [+] EMBL CD202565 [TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTTGTGGGGGCGTTGTGTTTCAGCTTTATTTCATACAATTTTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT] [+] EMBL CD202601 [TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATNGCNAAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTCGTTGTGGGGGTGTGTTTCAGCTTTATTTCATACAATTGTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9257#2 ------------------------------------------------------------ consensus_9257#3 ------------------------------------------------------------ consensus_9257#1 ------------------------------------------------------------ consensus_9257#0 TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATC 60 consensus_9257#2 --------------------------------------------------AATGCCACTC 10 consensus_9257#3 ------------------------------------------------------------ consensus_9257#1 ----AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCA 56 consensus_9257#0 GCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACAT 120 consensus_9257#2 AAGGT-CGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAGAGAATATTC 69 consensus_9257#3 ----T-CGTGG-TGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTC 54 consensus_9257#1 TTATT-GTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGT 115 consensus_9257#0 AAAATATGAAAATAAAAATGTATATCAAAGTCTAGCATCTTTAAAT-ATACGCCTCATGG 179 * * * * * * * ** * consensus_9257#2 CTTTATCTTCTCTGTTG----TAGAACCTGAAATTTCG-GATG-T-TGTTTCAGGTGTGT 122 consensus_9257#3 CTTTATCTTCTCTGTTG----TAGAACCTGAAATTTCG-GATG-T-TGTTTCAGGTAT-- 105 consensus_9257#1 CGCCACCTTTTCGATAA----GTTGGTTTGAGTTTATA-CACA-CATAAGTCAAGTCAAG 169 consensus_9257#0 TCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGAT 239 * ** *** * * * * * consensus_9257#2 ATAAACTCAAACCAACTTATCGAAA--AGGTGGCGACTTCAGTTTCA--GCCTTTGTTGA 178 consensus_9257#3 -----------CCGATTTGT--------GGGGGCG--TTGTGTTTCA--GCTTTATTTCA 142 consensus_9257#1 ACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTT 229 consensus_9257#0 AGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCG-CCTGTGAGCTA 298 ** * ** ** * consensus_9257#2 AGCCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTA- 237 consensus_9257#3 TACAATTTTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT------ 196 consensus_9257#1 AAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAAC 289 consensus_9257#0 CCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCA 358 ** * * * consensus_9257#2 ACTTGGAGTTTATGGTTC----ACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACT 293 consensus_9257#3 ------------------------------------------------------------ consensus_9257#1 ATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCAC 349 consensus_9257#0 TCTCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTT 418 consensus_9257#2 TGGGAACGTTGGATTGTAAATGTGATTTTGAA-- 325 consensus_9257#3 ---------------------------------- consensus_9257#1 GGGTAAGCCCAGGTCAAATCTGCCACCACG---- 379 consensus_9257#0 TTCAAAATCACATTTACAATCCAACGTTCCCAAG 452 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||