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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1110 fasta sequence
[GTCTCTTCTAACTCAGTACCACCTGTTCAAGGAAACGGACGCCCCGTCCGTAGTGTTCAGAAGAAACAAAATGCTACATCTCAATCCAACGGTTCCTGTGCAACCTGGAGTCACTGGCCTGGGAACTGGGGTTCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCAAATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAGTGGGTTTTCTAACGTTTATTGTATTTGTAATCTCCGATGCCTTTTTACCGTATGACTAAGAACTCTTATGAGTTCATTAGTTGCATCATTTTTATCCATTATCCTTCTCATATTACATTTTCGCACGTAATTTTGTCTTATTCGTTCTTAGAGTTGGATATTGACTAGTTGTCTAAATCACTACTAACTTTGTAATTTATCATCTGATTTCCCAGTTAATACCGTAGGTTTCTTTATGTAAGTTAATTTACGCTCACATATTANGGAAATA]
[+] EMBL CD178768 [GTCTCTTCTAACTCAGTACCACCTGTTCAAGGAAACGGACGCCCCGTCCGTAGTGTTCAGAAGAAACAAAATGCTACATCTCAATCCAACGGTTCCTGTGCAACCTGGAGTCACTGGCCTGGGAACTGGGGTTCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCAAATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCA ]
[-] EMBL CD183253 [ TCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCAAATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACA ]
[+] EMBL CD190209 [ ACAAAATCTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATGCCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATAAATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCAATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTGGTCAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTC ]
[+] EMBL CD164784 [ TCAACTAGCTCCACCTCCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAGTGGGTTTTCTAACGTTTATTGTATTTGTAATCTCCGATGCCTTTTTACCGTATGACTAAGAACTCTTATGAGTTCATTAGTTGCATCATTTTTATCCATTATCCTTCTCATATTACATTTTCGCACGTAATTTTGTCTTATTCGTTCTTAGAGTTGGATATTGACTAGTTGTCTAAATCACTACTAACTTTGTAATTTATCATCTGATTTCCCAGTTAATACCGTAGGTTTCTTTATGTAAGTTAATTTACGCTCACATATTANGGAAATA]
[-] EMBL CD139055 [ CAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATA ]
[-] EMBL CD148110 [ AATTGTTCCTGGTGGCTGGAATCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGA ]
consensusID : consensus_9259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[TTCTCTCGATCCGTTGGAGCAATTCCATCGACTCTTGGAATCACTCAGCTGCTGCTGGCCTTTGCCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGATCCTGGTGGCTGGAATCACGGGAATGCCGAATCACGTTCTCTGAACAGGCAATGGACAGGACCTACTTCCTACGATATTCCAGGGCCTAAGCCGCCCAACCATTTGGCTGCCAGCTATATTAACGAAGCACTACCTGCACATCAAAATGGAGCTTCTATATCTGTGATGGCAACAGCTGCTGCTATCGGTCTTGGCAACTCCCCACGTCGTCCACCGATGCCTCATTGATCATCGACAGGATCTGAAGATCCAAGTAGTATAAGATTACATGAATCATTGTACAGAACGTCTGCTGACTGCAATCTTTCTTCTACTCGTGCCGCAGCACCAAAGCCAGCTGGTCTCAA]
[+] EMBL CD188738 [TTCTCTCGATCCGTTGGAGCAATTCCATCGACTCTTGGAATCACTCAGCTGCTGCTGGCCTTTGCCAACTAGCTCCACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGATCCTGGTGGCTGGAATCACGGGAATGCCGAATCACGTTCTCTGAACAGGCAATGGACAGGACCTACTTCCTACGATATTCCAGGGCCTAAGCCGCCCAACCATTTGGCTGCCAGCTATATTAACGAAGCACTACCTGCACATCAAAATGGAGCTTCTATATCTGTGATGGCAACAGCTGCTGCTATCGGTCTTGGCAACTCCCCACGTCGTCCACCGATGCCTCATTGATCATCGACAGGATCTGAAGATCCAAGTAGTATAAGATTACATGAATCATTGTACAGAACGTCTGCTGACTGCAATCTTTCTTCTACTCGTGCCGCAGCACCAAAGCCAGCTGGTCTCAA]
consensusID : consensus_9259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence
[TAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCNTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGG-TGTCCACCGATGCCTCATTGGTCATCAACAGAATCTGTAGATCCAAGTAATATAAAATTAAATGAATCATTGTACAGAACGTCAGCTGGTGGCTATCTTTCTTTTACTCGTGGCGCAGCACCAAATCCACATGGTTTCAATTAATCCCATCCAGGTACACTTGTTCCAAATGGTTTACTCTTCGGTGATTGGTGTTGTGGTATGCGTACAAATAAGATAGGTTCATCAAGTGTTGTGTGTAACAGCA]
[-] EMBL CD127375 [TAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCNTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGG TGTCCACCGATGCCTCATTGGTCATCAACAGAATCTGTAGATCCAAGTAATATAAAATTAAATGAATCATTGTACAGAACGTCAGCTGGTGGCTATCTTTCTTTTACTCGTGGCGCAGCACCAAATCCACATGGTTTCAATTAATCCCATCCAGGTACACTTGTTCCAAATGGTTTACTCTTCGGTGATTGGTGTTGTGGTATGCGTACAAATAAGATAGGTTCATCAAGTGTTGTGTGTAACAGCA]
[+] EMBL CD072383 [ CAATGGACAGGACCTACTTCCTCCGTTATTCCAGGTCCTAGGCCGCCCAACCGTTTGGCTGCCAGTTATATTAACGAAGCACTCCCTGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGGTAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAGTAATATAAAATTAAATGAATCATTGTACAGAACGTCTGCTGGTTGCAATCTTTCTTCTACTCGTGGCGCAGCACCANATCCAGCTGGTCTCAATTttna ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9259#0 GTCTCTTCTAACTCAGTACCACCTGTTCAAGGAAACGGACGCCCCGTCCGTAGTGTTCAG 60
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 AAGAAACAAAATGCTACATCTCAATCCAACGGTTCCTGTGCAACCTGGAGTCACTGGCCT 120
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 GGGAACTGGGGTTCTCATGGTCAACCTCAAGCTTGGCCTCCTTTAGGCTGGGCTAATGCA 180
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 AATCCCAATCCTCCGCATAATGGCCAAACTGGAGTTGGTCCTGGCCCTCCTCTACAAAAT 240
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 CTTGGTACACCACTGGGAAACTGGCCTGATCATTCTATCAATTCTACAAATGGTTGGATG 300
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 CCTGCAGCTTGGGGTCACCAAATTGCTGCACCTACGACGGCAAATCGCATTCACACAATA 360
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 AATGATGACTCACTATACAATCAGCAATCTGCACACAAGTCTCAGCCCGGTTGGGATTCA 420
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 ATCTGTTTAGCTCCGATGGGGACTGTACCTGGTTCTGGGCATAATTCTCTTGATCCGTTG 480
consensus_9259#1 --------------------------------------------TTCTCTCGATCCGTTG 16
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 GT-CAATTCCATTGACTCTTGGAATCACTCAGCTGCTGCTGGTCTTTGTCAACTAGCTCC 539
consensus_9259#1 GAGCAATTCCATCGACTCTTGGAATCACTCAGCTGCTGCTGGCCTTTGCCAACTAGCTCC 76
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 ACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGTTCCTGGTGGCTGGAA 599
consensus_9259#1 ACCTTCTTTAAGTTCGAGCCTGGCCTTGGGCGCTCCATCAATTGATCCTGGTGGCTGGAA 136
consensus_9259#2 ------------------------------------------------------------
consensus_9259#0 TCACGGTAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGT 659
consensus_9259#1 TCACGGGAATGCCGAATCACGTTCTCTGAACAGGCAATGGACAGGACCTACTTCCTACGA 196
consensus_9259#2 ------TAATGCCGTATCACGTTCTCTGAACAGTCAATGGACAGGACCTACTTCCTCCGT 54
******* ****************** ********************** **
consensus_9259#0 TATTCCAGGTCCTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCC 719
consensus_9259#1 TATTCCAGGGCCTAAGCCGCCCAACCATTTGGCTGCCAGCTATATTAACGAAGCACTACC 256
consensus_9259#2 TATTCCAGGTCNTAGGCCGCCCAACCATTTGGCTGCCAGTTATATTAACGAAGCACTCCC 114
********* * ** ************************ ***************** **
consensus_9259#0 TGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGG 779
consensus_9259#1 TGCACATCAAAATGGAGCTTCTATATCTGTGATGGCAACAGCTGCTGCTATCGGTCTTGG 316
consensus_9259#2 TGCACATCAAAATGGAGCTTCTATATCTGGGATGGCAACAGCTGCTGCTATTGGTCTTGG 174
***************************** ********************* ********
consensus_9259#0 TAACTCCCCAGGTTGTCCACCGATGCCTCATTGGTCATCAACAGGATCTGTAGATCCAAG 839
consensus_9259#1 CAACTCCCCACGTCGTCCACCGATGCCTCATTGATCATCGACAGGATCTGAAGATCCAAG 376
consensus_9259#2 TAACTCCCCAGGT-GTCCACCGATGCCTCATTGGTCATCAACAGAATCTGTAGATCCAAG 233
********* ** ******************* ***** **** ***** *********
consensus_9259#0 TGGGTTTTCTAACGTTTATTGTATTTGTAATCTCCGATGCCTTTTTACCGTATGACTAAG 899
consensus_9259#1 TAG----TATAAGATTACATGAAT---CATTGTACAGAACGTCTGC------TGACTGCA 423
consensus_9259#2 TAA----TATAAAATTAAATGAAT---CATTGTACAGAACGTCAGC------TGGTGGCT 280
* * *** ** ** ** * * * * * * **
consensus_9259#0 AACTCTTATGAGTTCATTAGTTGCATCATTTTTATCCATTATCCTTCTCATATTACATTT 959
consensus_9259#1 ATCTTTCTTCTACTCGT--GCCGCAGCACCAAAGCCAGCTGGTCTCAA------------ 469
consensus_9259#2 ATCTTTCTTTTACTCGT--GGCGCAGCACCAAATCCACATGGTTTCAATTAATCCCATCC 338
* ** * * ** * * *** ** * * *
consensus_9259#0 TCGCACG-TAATTTTGTCTTATTCGTTCTTAGA-GTTGGATATTG-ACTAGTTGTCTAAA 1016
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 AGGTACACTTGTTCCAAATGGTTTACTCTTCGGTGATTGGTGTTGTGGTATGCGTACAAA 398
consensus_9259#0 TCACTACTAACTTTGTAATTTATCATCTGATTTCCCAGTTAATACCGTAGGTTTCTTTAT 1076
consensus_9259#1 ------------------------------------------------------------
consensus_9259#2 TAA--GATAGGTTCATCAAGTGTTGTGTGTAACAGCA----------------------- 433
consensus_9259#0 GTAAGTTAATTTACGCTCACATATTANGGAAATA 1110
consensus_9259#1 ----------------------------------
consensus_9259#2 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||