|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1015 fasta sequence
[TCACCGGGTGATACAGAAGCAGGATC-ACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCCACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA-GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAAAATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC]
[-] EMBL CD202535 [TCACCGGGTGATACAGAAGCAGGATC ACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCCACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAGTCAACAATTACAA ]
[+] EMBL CD202332 [ CACCGGGTGATACAGAAGCAGGATCAACT GTAGCTAAATGGTGTCCACCC GGTCTGCCATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTACGCGTGTTCCACGCTTTTC AGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATACAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACGGTTGAACGTTCACAGACCCTCTT AATACAGAGAGAAGACAACAAAA ]
[-] EMBL CD179482 [ GGGTGAAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGTTCAGATTTGCCGATTTCAACCTGGTTTACTTCTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC ]
[+] EMBL CD116447 [ TTATGAAGCTTTAAGAAATTATGCTAAGATTTATCGTCCTTCTGGACCACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACA ]
[-] EMBL CD123072 [ AAAGTATGAGCGGGCCTTAAATGAAGGCTGCTGCTCAGATTTGCCGATTTCAACGTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTC ]
[+] EMBL CD194643 [ GAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCA ]
[+] EMBL CD194702 [ GAA GCTGCTGCTCAGATTTGCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCA ]
[+] EMBL CD095122 [ CTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAACAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTACAACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTCAACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAACCCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAGCTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAGCTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTTTTTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTTAAAATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC]
consensusID : consensus_9260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence
[TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCCACAACTCCAAATCAAACCGA]
[+] EMBL CD178939 [TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAAATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATGATAACACTGTTCAATACTTATCTAACCTTCCTATTGCCAAACGTGATTCGGCATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATCAGATATGCCACAACTCCAAATCAAACCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9260#0 TCACCGGGTGATACAGAAGCAGGATCACTGGTAGCTAAATGGTGTCCACCCGGGTCTGCC 60
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 ATCTGAGTTTTATGCTATATTAAGAAGACAAGCGGAAGTCGTTGTTTCTGCGCGTGTTCC 120
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 ACGCCTTTCAAGATAATCCGTATCGTCCTGAACCTTACCATCGGAAGCTTGGTCCGTATA 180
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 CAGCTTACGTAGAGATGCTTGAAATGGTTAATACATACAGGGTTGGTACTAGTCAGGGTG 240
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 AAACCCTGGAACTTTATGAAGCTTTAAGAAATTATGCTAAAATTTATCGTCCTTCTGGAC 300
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 CACATTCTCGAGCACTTACAAAGTATGAGCTGGCCTTAAATGAAGCTGCTGCTCAGATTT 360
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 GCCGATTTCAACCTGGTTTACTTTTTCATAAACGAGATCTGTATCATCTTGCTAAAGAAA 420
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 CAGTTGAACGTTCACAGACCCTCTTAAATACAGAGAGAAGACAACAAAATCAACAATTAC 480
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 AACAGCTGGCACAACAAGCACAACAACAACAAGCTCAAGCAAAACAAAATATGAATACTC 540
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 AACGTCAAGCAAATCAAACAAATATGTCAAAACCAAAAGTCTCTCTTCCTATACCTCAAC 600
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 CCCCACGTACTACACCTCAAACTGTAGCAGTTGGAGGTCGTGTAGCTAGTTCTCAATTAG 660
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 CTATGTTGGAATCTCGTGGTCTTTCTGCTATTCCACAATCAAATACAGCAGTATCAACAG 720
consensus_9260#1 ------------------------------------------------------------
consensus_9260#0 CTAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA 780
consensus_9260#1 -TAGTTCTATAACTTCTATTCATGAGAATTCTAATTCAGATAACCCACTTCTAACTTCAA 59
***********************************************************
consensus_9260#0 ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG 840
consensus_9260#1 ATCTTCAAGGCTCAGGAGTAAATACGCTTCAGTCGAATAAACCGAGGGTAATGACTAATG 119
************************************************************
consensus_9260#0 ATAACACGTAAGTGAGCGCTAAAATTGTCAGTGTCTTCCATTATAGAAATCTAGGTT--T 898
consensus_9260#1 ATAACACT-------GTTCAATACTTATCTAACCTTCCTATTGCC-AAACGTGATTCGGC 171
******* * * * * ** ** * * *** *** * *
consensus_9260#0 TTAGTAGTTTTAACATTGTGTACTGGTGTTTATAGCTATTGTAGCGATGAATTTTTGGTT 958
consensus_9260#1 ATACAAACTTTTGCCTAACGAAGAGGAAGCCATTCGCGTTGCCGCAGTGGATGTTTTATC 231
** * *** * * * * ** ** *** ** ** ** *** *
consensus_9260#0 AAA-ATACTGGGTTTCCAATCTATCAGCTGCATCCTCGAATTTCATTNCATATGTTTC 1015
consensus_9260#1 AGATATGCCACAACTCCAAATCA--AACCGA--------------------------- 260
* * ** * ***** * * * *
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||