cluster # 9261

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Schistosoma mansoni
cluster # 9261 cluster # 9261 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9261#0 length = 672 sequences # 8

consensus_9261#1 length = 224 sequences # 1

consensusID : consensus_9261#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 672
fasta sequence

                              [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTATAGAAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACT-GGGGGCTAGAGCACTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACACGGTGTTCGAATACAGATCTTTACGGATATCCACATCACACTTCATAATCGAATTGTATGTAGTCTCATGAATTCCCGATGCTTCCATTCCCAAAAAGCTAGGTTGGAAAAGAGCTTCTGGACATCTGAATCGCTCATTACCAATCGTGATAACTTGACCATCTGGAAGTTCGTAACTCTTCTCCAATGCAGAACTCGAAGCTGCAGTACCCATCTCCTGCTCGAAATCCAAAGCAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCT]

[+] EMBL BF936759             [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTATAGAAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AI018971             [                                                           AAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACTGGGGGGCTAGAGCACTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACACGGTGTTCGAATACAGATCTTTACGGATATCCACATCACACTTCATAATCGAATTGTATGTAGTCTCATGAATTCCCGATGCTTCCA                                                                                                                                                                                                                                          ]
[+] EMBL AI018982             [                                                           AAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACT GGGGGCTAGAGCACTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACACGGTGTTCGAATACAGATCTTTACGGATATCCACATCACACTTCATAATCGAATTGTATGTA                                                                                                                                                                                                                                                                   ]
[+] EMBL AI019030             [                                                           AAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGNCCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTNGGAATGTTGATAATGANGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGNTCTTTATCTTCATTGTACT GGGGGCTAGAGCACTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACA                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL SMW734               [                                                           AAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACT GGGGGCTAGAGCACTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCA                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD074724             [                                                           AAAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACT GGGGGCTAGAGCACTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACACGGTGTTCGAATACAGATCTTTACGGATATCCACATCACACTTCATAATCGAATTGTATGTAGTCTCATGAATTCCCGATGCTTCCATTCCCAAAAAGCTAGGTTGGAAAAGAGCTTCTGGACATCTGAATCGCTCATTACCAATCGTGATAACTTGACCATCTGGAAGTTCGTAACTCTTCTCCAATGCAGAACTCGAAGCTGCAGTACCCATCTCCTGCTCGAAATCCAAAGCAACGTAACAAAGCTTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCTCAGTCAAGATCT]
[-] EMBL CD059390             [                                                                                TATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGAAACATTTACGGTGAGCAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAACCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACT GGGGGCTAGAGCAGTAATCTCCTTCTGCATACGGTCAGCAATACCAGGATACATCGTACTT                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD059520             [                                                                                                    AGTAATGAAGTCAGATTAGAAACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACATCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCCGTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACT GGGGGCTAGAGC TTAATCTCCTTATGCATACGGTCAGCAATTCGAGGAAGCATCGTACTT                                                                                                                                                                                                                                                                                                                                              ]




>consensus_9261#0
ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTATAGA
AAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGA
AACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACA
TCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCC
GTTCAGGTGGTGCAACGATCTTTATCTTCATTGTACTGGGGGCTAGAGCACTAATCTCCT
TCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACACGGTGTTCG
AATACAGATCTTTACGGATATCCACATCACACTTCATAATCGAATTGTATGTAGTCTCAT
GAATTCCCGATGCTTCCATTCCCAAAAAGCTAGGTTGGAAAAGAGCTTCTGGACATCTGA
ATCGCTCATTACCAATCGTGATAACTTGACCATCTGGAAGTTCGTAACTCTTCTCCAATG
CAGAACTCGAAGCTGCAGTACCCATCTCCTGCTCGAAATCCAAAGCAACGTAACAAAGCT
TCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTCT
CAGTCAAGATCT

consensusID : consensus_9261#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TAGGGTTAGGAAAGGTTGACCATAAAAATGCACATCTCGCCTTATCTTACGGATATCCGTCTCCGGCGGTAAGGTCCTTTGAAGAGCGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGTTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACGTTCTCAGGTCACTAAGATCACTTCTAATCCATTTTTCTTTACAGGTACCTCCAGAG]

[+] EMBL CD184280             [TAGGGTTAGGAAAGGTTGACCATAAAAATGCACATCTCGCCTTATCTTACGGATATCCGTCTCCGGCGGTAAGGTCCTTTGAAGAGCGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGTTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACGTTCTCAGGTCACTAAGATCACTTCTAATCCATTTTTCTTTACAGGTACCTCCAGAG]




>consensus_9261#1
TAGGGTTAGGAAAGGTTGACCATAAAAATGCACATCTCGCCTTATCTTACGGATATCCGT
CTCCGGCGGTAAGGTCCTTTGAAGAGCGGAGCTAACACGTCAAAAATCCCCCACAAAAAG
GTTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACGTTCTCAGGTCAC
TAAGATCACTTCTAATCCATTTTTCTTTACAGGTACCTCCAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9261#0      ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTATAGA 60
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AAATCTTTATTCCGTGATATTATTTATACCATTTGTACAAAGTAATGAAGTCAGATTAGA 120
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AACATTTACGGTGAACAATACTTGGACCAGATTCATCATACTCCTGTTTAGAAATCCACA 180
consensus_9261#1      --------------------------------------------------------TAGG 4
                                                                               *  

consensus_9261#0      TCTGTTGGAATGTTGATAATGAAGCCAAAATAGAACCACCAATCCATACTGAGTACTTCC 240
consensus_9261#1      GTTAG-GAAAGGTTGACCATAAA-----AATGCACATCTCGCCTTATCTTACGGATATCC 58
                        *   * ** *****  ** **     ***  *     *     **  *  * *  ***

consensus_9261#0      GT-TCAGGTGGTGCAACGATCTTTATCTTCATTGTACTGGGGGCTAGAGCACTAATCTCC 299
consensus_9261#1      GTCTCCGGCGGT---AAGGTC-----CTTTGAAGAGC--GGAGCTAACACGTCAAAAATC 108
                      ** ** ** ***   * * **     ***    *  *  ** ****   *   **    *

consensus_9261#0      TTCTGCATACGGTCAGCAATACCAGGATACATCGTACTTCCACCAGACAACACGGTGTTC 359
consensus_9261#1      CCCCACAAAAAGGTTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGT-CAC 167
                        *  ** *  *   *    ***    *  * *     ***    * **   ****   *

consensus_9261#0      GAATACAGATCTTTACGGATATCCACATCACACTTCATAATCGAATTGTATGTAGTCTCA 419
consensus_9261#1      GTTCTCAGGTCACTAAGATCACTTCTAATCCATTTTTCTTTACAGGTACCTCCAGAG--- 224
                      *    *** **  ** *   *     *   ** **     *  *  *   *  **     

consensus_9261#0      TGAATTCCCGATGCTTCCATTCCCAAAAAGCTAGGTTGGAAAAGAGCTTCTGGACATCTG 479
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      AATCGCTCATTACCAATCGTGATAACTTGACCATCTGGAAGTTCGTAACTCTTCTCCAAT 539
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      GCAGAACTCGAAGCTGCAGTACCCATCTCCTGCTCGAAATCCAAAGCAACGTAACAAAGC 599
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TTCTCCTTTATATCTCGCACAATTTCACGTTCTGCAGTAGTAGTAAAACTGTAACCTCTC 659
consensus_9261#1      ------------------------------------------------------------
                                                                                  

consensus_9261#0      TCAGTCAAGATCT 672
consensus_9261#1      -------------