These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence [GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCATGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTAAATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAAAACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAATTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTATATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAATTACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGAGGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGATATCAGCTCACTGAAGACATTGGTGAATGGTTGTTCGATTTCGTGGATGGGTTGAAGTTAGACATAAACACCGTTGAATGCCGGCTCAGTGGTCTGTCGGTTAAGTGCTCTGGCTTAAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGTGCGGGATCGTGGATGCGCACTGCTGAGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCTGTTGCGCTTTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTGTTACAGTTTTGTAGTCTTAATTTATTATGTA] [+] EMBL CD090644 [GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCATGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTAAATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAAAACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAATTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTATATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAATTACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGAGGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGATATCAGCTCACTGAAGACATTGGTGAA ] [+] EMBL CD072018 [ TATGCTCACTAGTGACTGGCTCCATGAGGTATCTCCTGGAGTTCCAGTGAGAAGTAGTAACCAGTGGAGTTCAACCAGGTCTGTTGGGAGAGATCAACTCACTGAAGACATTGGTGAATGGTTGTTCGATTTCGTGGATGGGTTGAAGTTAGACATAAACACCGTTGAATGCCGGCTCAGTGGTCTGTCGGTTAAGTGCTCTGGCTTAAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGTGCGGGATCGTGGATGCGCACTGCTGAGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCTGTTGCGCTTTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTGTTACAGTTTTGTAGTCTTAATTTATTATGTA] consensusID : consensus_9263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 539 fasta sequence [ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC] [+] EMBL CD119981 [ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACTGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC] [+] EMBL CD119969 [ACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAA CACACATTCTATGCTGGACTATCCAATTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGGCTCATACAGGCGGCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGGCTCATACAGGTGCCTCGGCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGGCTCATACAGTTGC ] [+] EMBL CD119780 [ ACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGATGCCTCGGCAATTCACAAACCTATTCGTCACACTCAAAAACCACACATACTATGCTGAACTATCCAGATAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCAGACAGATGCCTCGGCAATTCACAAACCTATTCGTCACACTCAAAAACCACACATACTATGCTGAACTAGCCAGATAGATCTACTACGACCCAGCACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGATGCCTCGGCAATTCACAAACCTATTCGTCACACTCAAAAACCACACATCCTATGCTGTACTAGCCAGTTAGATCTACTACGACCCAGCACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCAGACAGATGCCTCGGCAATTGACAAAC ] [-] EMBL CD114025 [ TTAGTTANACGACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGATGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTAGTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTATTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGATAGATCTACTACGAC CCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCT ] [-] EMBL CD163721 [ TATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTTCGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTTAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTC ] consensusID : consensus_9263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [TGCATCGATTTTCGGTAATGGAGTATTAGTCGATGGTTTGAATGGTGTTGTTGGAGTAGCGACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTAGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTTTGAGTGTGGCGAAGAGGTTTGTGAATTGACGAGGCAACTGTATGAGACAGTGTTAGTGAGTTATAGGTTGGTTGGTGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTGGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTT] [+] EMBL CD135241 [TGCATCGATTTTCGGTAATGGAGTATTAGTCGATGGTTTGAATGGTGTTGTTGGAGTAGCGACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTAGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTTTGAGTGTGGCGAAGAGGTTTGTGAATTGACGAGGCAACTGTATGAGACAGTGTTAGTGAGTTATAGGTTGGTTGGTGTTGGTGTTGGTGTTGGTGTTGGGTCGTAGTGGAACTAACTGGATAGTACAGCATAGGATGTGTGGTTTT] consensusID : consensus_9263#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [ACTCACTAACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTCCGCGATGCACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAGCACCAACACCAACACCAACCAGCCTATAACTCACTAACACTGTCTCATAC] [+] EMBL CD143106 [ACTCACTAACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTCCGCGATGCACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAGCACCAACACCAACACCAACCAGCCTATAACTCACTAACACTGTCTCATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9263#1 ------------------------------------------------------------ consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 GACGAAATGGCCATTCAGTAACTCTAGGATTTCAATGGTGGTCTAGGATTAATCAGTTCA 60 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 ------------------------------------------------------------ consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 TGATCTCGATTAAAGCTCAGATATTTTTGTCGGTATTTATTAAATCATAATGTCAATTTA 120 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 -------------------------------ACACCAACACCAACACCAACACCAACCAA 29 consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 AATTTAAGATTTCTTAGCTTCTAGTATTACTATACTCGCTTGAATTTAAATCATAAAAAA 180 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 CCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCC 89 consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 AACTAAATTCATCGCGCTCTTGCATATTTAAATATATTTTAGGATATAAATTACTTGTAA 240 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 ACACTCAAAAACCACACATCCTATGCTGGACTATCCAGTTAGTTCTACTACGACCCAACA 149 consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 TTCTCATAATGTTTCAGTTATCACTGAGACGTATTTAAATAGTTGTTTCAATTTCATTAT 300 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 CCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGC 209 consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 ATATGATTACTGTATGGTGAAAATTACTTATCACTCATGATTGCAACTATGTATAAGAAT 360 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 CTCGTCAATTCACAA------ACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTG 263 consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 TACTAAAAATCTCCATAAACAACCCCCTTATCATATGCTCACTAGTGACTGGCTCCATGA 420 consensus_9263#2 -----------------------TGCATCGATTTTCGGTAATGGAGTATTAG-TCGATGG 36 consensus_9263#1 TACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAA 323 consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 GGTATATCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTCAACCAGGTCTGTTGG 480 consensus_9263#2 TTTGAATGGTGTTGTTGGAGTAGCGACTGGAGTTGACGTTGGTGTTGGTGTTGGTGTTGG 96 consensus_9263#1 CCAACC-TATAACTCACT-AACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTC 381 consensus_9263#3 -----------ACTCACT-AACACTGTCTCATACAGTTGCCTCGATCGAACTCCCGCGTC 48 consensus_9263#0 GAGATA-T-CAGCTCACTGAAGACATTGGTGAATGGTTGT-TCGATTTCGTGGATGGGTT 537 consensus_9263#2 GTCGTAGTAGAACTAACTGGATAGTACAGCATA-GGATGTGTGGTTTTTGAGTGTGGCGA 155 ** *** * * * * ** * * consensus_9263#1 TTCGCCACACTCAAAAACCACACAT-CCTATGCTGTACTATCCAGTTAGTTC--TACTAC 438 consensus_9263#3 CGCGATGCACTCAAAAACCACACAT-CCTATGCTGTACTATCCAGTTAGTTC--TACTAC 105 consensus_9263#0 GAAGTTAGACATAAACACCGTTGAA-TGCCGGCT-CAGTGGTCTGTCGGTTAAGTGCTCT 595 consensus_9263#2 AGAGGTTTGTGAATTGACGAGGCAACTGTATGAGACAGTG-TTAGTGAGTTA--TAGGTT 212 * * ** * * * * ** *** * consensus_9263#1 GACCCAACACCAACA----CCAACACCAACACCAACCAAC-CTATAACTCA-CTAACACT 492 consensus_9263#3 GACCCAACACCAGCA----CCAACACCAACACCAACCAGC-CTATAACTCA-CTAACACT 159 consensus_9263#0 GGCTTAAAACCGGTAGGTCCTGGGCTCGACTCTCGCAAGT-GCGGGA-TCG-TGGATGCG 652 consensus_9263#2 GG-TTGGTGTTGGTG----TTGGTGTTGGTGTTGGGTCGTAGTGGAACTAACTGGATAGT 267 * * * * consensus_9263#1 GTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCGCCACACTC------------- 539 consensus_9263#3 GTCTCATAC--------------------------------------------------- 168 consensus_9263#0 CACTGCTGAGAAGTTCCACAATAGGATGAAACGGCCGTCCAGTGCTTACAGGTTTTCCAT 712 consensus_9263#2 ACAGCATAGGATGTGTGGTTTT-------------------------------------- 289 * consensus_9263#1 ------------------------------------------------------------ consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 GGTGGTCTAGCTTCAATTGACTCATGATCTCAACTATACGAAGTTAATTGTTATATGTCT 772 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 ------------------------------------------------------------ consensus_9263#3 ------------------------------------------------------------ consensus_9263#0 GTTGCGCTTTTCCTTTCCACATAATCTTTGAATATTCTTACAACTGTCCAATCGGCATTG 832 consensus_9263#2 ------------------------------------------------------------ consensus_9263#1 ------------------------------- consensus_9263#3 ------------------------------- consensus_9263#0 TTACAGTTTTGTAGTCTTAATTTATTATGTA 863 consensus_9263#2 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||