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Schistosoma mansoni
cluster # 9264 cluster # 9264       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9264#0 length = 715 sequences # 5  
consensus_9264#1 length = 528 sequences # 1  
consensus_9264#2 length = 351 sequences # 2  
consensus_9264#3 length = 229 sequences # 1  

consensusID : consensus_9264#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 715
fasta sequence
                              [CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTT-GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT-GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG-AAACAGGATGTTGAT-G-AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA-TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAG-AAAATAACACCACGGGTATTG]

[+] EMBL CD080718             [CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTT GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAG AAAATAACACCACGGGTATT ]
[+] EMBL CD083319             [                 ggTGCATGTACTTATTTCTAGTT GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGAC                                                                                                                                                                                                                                                                    ]
[+] EMBL SM843                [                                    AGTTGGTCGGTGGCCCNGCTTNGTTTGCGTCAGCTGTTTACATTAGATTTTACNAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGATGG AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGT                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD074643             [                                                                                                                                             CACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAAATAACACCACGGGTATTG]
[+] EMBL SM3841               [                                                                                                                                                                                                                 AATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATTGGGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAGAAAACAGGATGTTGAT GAAATTACTCAGTTATAA  C AATA TA TATACTGAGTAAAGGAGTCATATCTCAGTTGAAAGTGTCCCAATCATTTAATTGATTACATAAATCAt                                                                                                                                                                                                                                                                                                    ]


>consensus_9264#0 CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTT TGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCT TTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGT GGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGC AAAACTTTGGCCAAATGGTAGTCGTGCATGGGATTGGAACGAATCTGGCACTGGTCATTT TGCAGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTAT ACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCATTAATTGATTACATAAA TCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTA TAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATA GAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATAT CATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTG TTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAATAACACCACGGGTATTG



consensusID : consensus_9264#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence
                              [TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATGTTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCATCTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG]

[+] EMBL CD088174             [TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATGTTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCATCTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG]


>consensus_9264#1 TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATT CACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATG ATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGAT AAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATG TTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGG ATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCAT CTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAAT AATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAG AAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG



consensusID : consensus_9264#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 351
fasta sequence
                              [TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCATCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC]

[+] EMBL CD154642             [TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCATCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTCACCT                                                                                                           ]
[+] EMBL CD154641             [                                                   ACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGATAGATGAATCGTTAATTCATCGATTTGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATAGACTACTGTCTTTACAATCTGGATCAACATTTCTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC]


>consensus_9264#2 TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCC AGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCA TCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTAT GTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTC ACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTT ACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC



consensusID : consensus_9264#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence
                              [GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA]

[+] EMBL SM844                [GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA]


>consensus_9264#3 GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGG GGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGA GTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAAT CAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9264#0      CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTT 60
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      ------------------------------------------------------------
consensus_9264#1      ------------------------------------------------------------
                                                                                  

consensus_9264#0      TGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCT 120
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      ------------------------------------------------------------
consensus_9264#1      -------------------------TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATT 35
                                                                                  

consensus_9264#0      TTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGT 180
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      ------------------------------------------------------------
consensus_9264#1      AAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCG 95
                                                                                  

consensus_9264#0      GGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGC 240
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      -------------------------------------------------------TAATT 5
consensus_9264#1      ATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTA-------ATTT 148
                                                                                  

consensus_9264#0      AAAACTTTGGCCAAATGGTAGTCGTGCATGGGA-TTGGAACGAATCTGGCACTGGTCATT 299
consensus_9264#3      --------GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAAT 52
consensus_9264#2      GCAATCTTGATCAACCTTTCCTGTTGCATATGG-ACGTAAAAAATATA-CGATGGCCAGA 63
consensus_9264#1      GACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAA--ATTATGCAAA 206
                                  *     *         *         **  ***       *   **  

consensus_9264#0      TTGCA--GGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATA--AACCAAATATT 355
consensus_9264#3      TTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATA--AACCAAATATT 110
consensus_9264#2      TGATT-----CTTCACAGTCATCATCGTCATTGATTGCTGAGCTA----GATGAATCGTT 114
consensus_9264#1      CTATT--ACCACGTAAAGGTGAAATAGCTA-GAAATGTTGATCCAGATTGTAAAGACAGT 263
                                    * *      **    *   * *  * *   *        *     *

consensus_9264#0      ATTATACTGAGTAAAGGAGTACTATCTCAGTTG-AAAGTGTCCCAATCA-TTAATTG-AT 412
consensus_9264#3      ATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGAT 170
consensus_9264#2      AATTCATCGATTCGATTTA-ATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACC-AT 172
consensus_9264#1      AGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCA-GC 322
                      * *  *  ** *          **    *   *     *      *  *           

consensus_9264#0      TACA-TAAATCAA-TCGAAT-CCACATATTAAAG--TAATGGTAG-AGACAAGTAAAAAA 466
consensus_9264#3      TACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA- 229
consensus_9264#2      TTCAGTATGTTAAATACAAT-CAATGGACTACTG--TCTTTACAATCTGCATCAACATTT 229
consensus_9264#1      TGCCATA-ATTAAATCAAAT-CGATGAATTAACGATTCATCTAGCTCAGCAATCAATGAC 380
                      * *  **  * ** *   ** * *   * **     *  *         **   *     

consensus_9264#0      GCATTCAAATTGTATA-ACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACA 525
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      CTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTG-TTTG 288
consensus_9264#1      GATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATA-A 439
                                                                                  

consensus_9264#0      TACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTT 585
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      CGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTT 348
consensus_9264#1      AACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTT 499
                                                                                  

consensus_9264#0      CCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTAT 645
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      GTC--------------------------------------------------------- 351
consensus_9264#1      GTATACAAGATAAAACTTTCGTACAAAAG------------------------------- 528
                                                                                  

consensus_9264#0      TTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAATAACACC 705
consensus_9264#3      ------------------------------------------------------------
consensus_9264#2      ------------------------------------------------------------
consensus_9264#1      ------------------------------------------------------------
                                                                                  

consensus_9264#0      ACGGGTATTG 715
consensus_9264#3      ----------
consensus_9264#2      ----------
consensus_9264#1      ----------
                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)