These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 715 fasta sequence [CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTT-GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT-GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG-AAACAGGATGTTGAT-G-AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA-TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAG-AAAATAACACCACGGGTATTG] [+] EMBL CD080718 [CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTT GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAG AAAATAACACCACGGGTATT ] [+] EMBL CD083319 [ ggTGCATGTACTTATTTCTAGTT GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGAC ] [+] EMBL SM843 [ AGTTGGTCGGTGGCCCNGCTTNGTTTGCGTCAGCTGTTTACATTAGATTTTACNAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGATGG AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGT ] [-] EMBL CD074643 [ CACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAAATAACACCACGGGTATTG] [+] EMBL SM3841 [ AATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATTGGGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAGAAAACAGGATGTTGAT GAAATTACTCAGTTATAA C AATA TA TATACTGAGTAAAGGAGTCATATCTCAGTTGAAAGTGTCCCAATCATTTAATTGATTACATAAATCAt ] consensusID : consensus_9264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATGTTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCATCTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG] [+] EMBL CD088174 [TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATGTTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCATCTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG] consensusID : consensus_9264#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence [TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCATCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC] [+] EMBL CD154642 [TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCATCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTCACCT ] [+] EMBL CD154641 [ ACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGATAGATGAATCGTTAATTCATCGATTTGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATAGACTACTGTCTTTACAATCTGGATCAACATTTCTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC] consensusID : consensus_9264#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA] [+] EMBL SM844 [GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9264#0 CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTT 60 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 ------------------------------------------------------------ consensus_9264#1 ------------------------------------------------------------ consensus_9264#0 TGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCT 120 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 ------------------------------------------------------------ consensus_9264#1 -------------------------TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATT 35 consensus_9264#0 TTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGT 180 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 ------------------------------------------------------------ consensus_9264#1 AAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCG 95 consensus_9264#0 GGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGC 240 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 -------------------------------------------------------TAATT 5 consensus_9264#1 ATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTA-------ATTT 148 consensus_9264#0 AAAACTTTGGCCAAATGGTAGTCGTGCATGGGA-TTGGAACGAATCTGGCACTGGTCATT 299 consensus_9264#3 --------GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAAT 52 consensus_9264#2 GCAATCTTGATCAACCTTTCCTGTTGCATATGG-ACGTAAAAAATATA-CGATGGCCAGA 63 consensus_9264#1 GACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAA--ATTATGCAAA 206 * * * ** *** * ** consensus_9264#0 TTGCA--GGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATA--AACCAAATATT 355 consensus_9264#3 TTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATA--AACCAAATATT 110 consensus_9264#2 TGATT-----CTTCACAGTCATCATCGTCATTGATTGCTGAGCTA----GATGAATCGTT 114 consensus_9264#1 CTATT--ACCACGTAAAGGTGAAATAGCTA-GAAATGTTGATCCAGATTGTAAAGACAGT 263 * * ** * * * * * * * * consensus_9264#0 ATTATACTGAGTAAAGGAGTACTATCTCAGTTG-AAAGTGTCCCAATCA-TTAATTG-AT 412 consensus_9264#3 ATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGAT 170 consensus_9264#2 AATTCATCGATTCGATTTA-ATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACC-AT 172 consensus_9264#1 AGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCA-GC 322 * * * ** * ** * * * * * consensus_9264#0 TACA-TAAATCAA-TCGAAT-CCACATATTAAAG--TAATGGTAG-AGACAAGTAAAAAA 466 consensus_9264#3 TACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA- 229 consensus_9264#2 TTCAGTATGTTAAATACAAT-CAATGGACTACTG--TCTTTACAATCTGCATCAACATTT 229 consensus_9264#1 TGCCATA-ATTAAATCAAAT-CGATGAATTAACGATTCATCTAGCTCAGCAATCAATGAC 380 * * ** * ** * ** * * * ** * * ** * consensus_9264#0 GCATTCAAATTGTATA-ACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACA 525 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 CTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTG-TTTG 288 consensus_9264#1 GATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATA-A 439 consensus_9264#0 TACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTT 585 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 CGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTT 348 consensus_9264#1 AACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTT 499 consensus_9264#0 CCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTAT 645 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 GTC--------------------------------------------------------- 351 consensus_9264#1 GTATACAAGATAAAACTTTCGTACAAAAG------------------------------- 528 consensus_9264#0 TTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAATAACACC 705 consensus_9264#3 ------------------------------------------------------------ consensus_9264#2 ------------------------------------------------------------ consensus_9264#1 ------------------------------------------------------------ consensus_9264#0 ACGGGTATTG 715 consensus_9264#3 ---------- consensus_9264#2 ---------- consensus_9264#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||