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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9264#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 715 fasta sequence
[CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTT-GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT-GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG-AAACAGGATGTTGAT-G-AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA-TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAG-AAAATAACACCACGGGTATTG]
[+] EMBL CD080718 [CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTT GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAG AAAATAACACCACGGGTATT ]
[+] EMBL CD083319 [ ggTGCATGTACTTATTTCTAGTT GTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGAC ]
[+] EMBL SM843 [ AGTTGGTCGGTGGCCCNGCTTNGTTTGCGTCAGCTGTTTACATTAGATTTTACNAATTAACTGTTACACGACCTAATAAATATCTTTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGATGG AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGT ]
[-] EMBL CD074643 [ CACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGTGGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATT GGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAG AAACAGGATGTTGAT G AATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGTTGAAAGTGTCCCAATCA TTAATTGATTACATAAATCAATCGAATCCACATATTAAAGTAATGGTAGAGACAAGTAAAAAAGCATTCAAATTGTATAACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACATACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTTCCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTATTTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAAATAACACCACGGGTATTG]
[+] EMBL SM3841 [ AATCCAAACAAGTTAATTACATACCGAGATGCAAAACTTTGGCCAAATGGTAGTCGTGCATGGGATTGGGAACGAATCTGGCACTGGTCATTTTGCAGGGATTCAGAAAACAGGATGTTGAT GAAATTACTCAGTTATAA C AATA TA TATACTGAGTAAAGGAGTCATATCTCAGTTGAAAGTGTCCCAATCATTTAATTGATTACATAAATCAt ]
consensusID : consensus_9264#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence
[TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATGTTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCATCTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG]
[+] EMBL CD088174 [TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATTAAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCGATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTAATTTGACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAAATTATGCAAACTATTACCACGTAAAGGTGAAATAGCTAGAAATGTTGATCCAGATTGTAAAGACAGTAGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCAGCTGCCATAATTAAATCAAATCGATGAATTAACGATTCATCTAGCTCAGCAATCAATGACGATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATAAAACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTTGTATACAAGATAAAACTTTCGTACAAAAG]
consensusID : consensus_9264#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence
[TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCATCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC]
[+] EMBL CD154642 [TAATTGCAATCTTGATCAACCTTTCCTGTTGCATATGGACGTAAAAAATATACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGCTAGATGAATCGTTAATTCATCGATTCGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATGGACTACTGTCTTTACAATCTGCATCAACATTTCTAGCTATTTCACCT ]
[+] EMBL CD154641 [ ACGATGGCCAGATGATTCTTCACAGTCATCATCGTCATTGATTGCTGAGATAGATGAATCGTTAATTCATCGATTTGATTTAATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACCATTTCAGTATGTTAAATACAATCAATAGACTACTGTCTTTACAATCTGGATCAACATTTCTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTTTGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTTGTC]
consensusID : consensus_9264#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA]
[+] EMBL SM844 [GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAATTTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATAAACCAAATATTATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGATTACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9264#0 CANAATTCGGCTCGAGGGCTGCATGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTGTT 60
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 ------------------------------------------------------------
consensus_9264#1 ------------------------------------------------------------
consensus_9264#0 TGCGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCT 120
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 ------------------------------------------------------------
consensus_9264#1 -------------------------TGTAAAACACTAATTAGTGTCGTGTAAAAGCAATT 35
consensus_9264#0 TTGTCCAATGTCTCAATGTTCACCACTCATTAAAAATATGTCATGGGGTTCCATTACAGT 180
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 ------------------------------------------------------------
consensus_9264#1 AAATGACCAATTTTACTATCTAATTCACTGTCAGTAAATTGAAGACGATTTGATTCATCG 95
consensus_9264#0 GGAAACAATATCTGAAGATGGAACAATCAATCCAAACAAGTTAATTACATACCGAGATGC 240
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 -------------------------------------------------------TAATT 5
consensus_9264#1 ATTAAATAACTTATAAACTGTGATGATAAGTAGTCTGAAGGTGATATTA-------ATTT 148
consensus_9264#0 AAAACTTTGGCCAAATGGTAGTCGTGCATGGGA-TTGGAACGAATCTGGCACTGGTCATT 299
consensus_9264#3 --------GGNCAAATGGTAGTCGNGCATGGGAATTGGAACGAATCTGGCACTGGTCAAT 52
consensus_9264#2 GCAATCTTGATCAACCTTTCCTGTTGCATATGG-ACGTAAAAAATATA-CGATGGCCAGA 63
consensus_9264#1 GACAGTCCAACTATAAGTTTGCTCCATTTGATAAGCCAAATTAATAAA--ATTATGCAAA 206
* * * ** *** * **
consensus_9264#0 TTGCA--GGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATA--AACCAAATATT 355
consensus_9264#3 TTGGNAGGGGATTCAGAAACAGGATGTTGATGAATTACTCAGTTATA--AACCAAATATT 110
consensus_9264#2 TGATT-----CTTCACAGTCATCATCGTCATTGATTGCTGAGCTA----GATGAATCGTT 114
consensus_9264#1 CTATT--ACCACGTAAAGGTGAAATAGCTA-GAAATGTTGATCCAGATTGTAAAGACAGT 263
* * ** * * * * * * * *
consensus_9264#0 ATTATACTGAGTAAAGGAGTACTATCTCAGTTG-AAAGTGTCCCAATCA-TTAATTG-AT 412
consensus_9264#3 ATTATACTGAGTAAAGGAGTACTATCTCAGGTGGAAAGTGTCCCAATCAATTAATTGGAT 170
consensus_9264#2 AATTCATCGATTCGATTTA-ATTATGGCAGCTGATTGTTTCTTTGATCAATCCTACC-AT 172
consensus_9264#1 AGTCTATTGATTGTGTTTAACATACTGAAATGGTAGGATTGATCAAAGAAACAATCA-GC 322
* * * ** * ** * * * * *
consensus_9264#0 TACA-TAAATCAA-TCGAAT-CCACATATTAAAG--TAATGGTAG-AGACAAGTAAAAAA 466
consensus_9264#3 TACAATAAATCAAATCGGATTCCACATATTAAANGGTAATGGGAGGAGACAAGTAAAAA- 229
consensus_9264#2 TTCAGTATGTTAAATACAAT-CAATGGACTACTG--TCTTTACAATCTGCATCAACATTT 229
consensus_9264#1 TGCCATA-ATTAAATCAAAT-CGATGAATTAACGATTCATCTAGCTCAGCAATCAATGAC 380
* * ** * ** * ** * * * ** * * ** *
consensus_9264#0 GCATTCAAATTGTATA-ACGAATATGCAATTCAAGGTGAACGTGTTGCCGCCTTAATACA 525
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 CTAGCTATTTCACCTTTACGTGTACTTATTTCTAGTTGTCGGTGGCTTTGCTTTG-TTTG 288
consensus_9264#1 GATGATGACTGTGAAGACTGCAAAACAAAATCAGGTCAATAATTGAACAGTAAGAATA-A 439
consensus_9264#0 TACTACTTGTTGATAGAACTGACTTTTTATTAACGATGTTATGTTATTTTTTGTTGGCTT 585
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 CGTCAGCTGTTTACATTAGATTTTACAAATTAACTGTTACACGACCTAATAAATATCTTT 348
consensus_9264#1 AACAGACTTTTGGCAGTTACAAATCAAATGTAGTAGGATAGAAACGTAATCAAGCAATTT 499
consensus_9264#0 CCCCGTTTATCATATCATCACCATATTTGAGATAGATAACTTCTTTATAATAAGATTTAT 645
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 GTC--------------------------------------------------------- 351
consensus_9264#1 GTATACAAGATAAAACTTTCGTACAAAAG------------------------------- 528
consensus_9264#0 TTTGTCATTGAACTGTTTGTTTATTTTATTTCTTTGTTTGCTTAAAGAGAAAATAACACC 705
consensus_9264#3 ------------------------------------------------------------
consensus_9264#2 ------------------------------------------------------------
consensus_9264#1 ------------------------------------------------------------
consensus_9264#0 ACGGGTATTG 715
consensus_9264#3 ----------
consensus_9264#2 ----------
consensus_9264#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||