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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1100 fasta sequence
[CTTCAATATCTCTATTGACGGGGCACGAATTCGGTTGTATTTGCTTGTTACTGTTTTATAACCATCTCAAGAAATCATTATAACAATGCAATATATACCAACCTATACATGATATGTCAATCATGGAAATCTAGTTTATTGATATGCAGAGCATTTTATTGGATATAATATTATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGTTTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGCCAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCATTATTCCCACCAATTTATCAATCTCATGTGTTGACCCCGCATCTATAGCTTCACATCACGACAGAGCTTGCGAAATATTTGCACAGATAACCGGTACATTGGTGGATTATGGATTAGGACATTCAAAATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCACTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATAAATACAGCCAGAGTTCTCCAAAGACTTCTCGAAATCAATTTTTGGAATAAGGAAACAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGAATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTG]
[+] EMBL CD188805 [CTTCAATATCTCTATTGACGGGGCACGAATTCGGTTGTATTTGCTTGTTACTGTTTTATAACCATCTCAAGAAATCATTATAACAATGCAATATATACCAACCTATACATGATATGTCAATCATGGAAATCTAGTTTATTGATATGCAGAGCATTTTATTGGATATAATATTATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGTTTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGAT ]
[-] EMBL BG930422 [ GCTTGTTACTGTTTTATAACCATCTCAAGAAATCATTAGAACAATGCAATATATACCAACCTATACATGATATGTCAATCATGGAAATCTAGTTTATTGATATGCAGAGCATTTTATTGGATATAATATTATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGTTTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGCCAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCATTATTCCCACCAATTTATCAATCTCATGTGTTGACCCCGCATCTA ]
[+] EMBL CD083332 [ gcacgaggAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGCCAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCATTATTCCCACCAATTTATCAATTTCATGTGTTGACCCAAGTCCTATAGCTTCACATCACGACAGAGCTTGCGAAATATTTGCACAGATAACCGGTACATTGGTGGATTATGGATTAGGACATTCAAAATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCACTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATAAATACAGCCAGAGTTCTCCAAAGACTTCTCGAAATCAATTTTTGGAATAAGGAAACAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATT ]
[+] EMBL CD115757 [ CATTCAAAATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCACTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATAAATACAGCCAGAGTTCTCCAAAGACTTCTCGAAATCAATTTTTGGAATAAGGAAACAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGAATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGA ]
[+] EMBL CD084298 [ CAAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGTATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGAATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTG]
consensusID : consensus_9265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence
[TCGAGCCAATAATTCGGCACGAGGGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCCACAGTGGTACATTTTATCTTTCCCTATTTTCCAGTGCAACTATGTCATCTACTCTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATGATGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATCATTTGTTGAAGTGTTTCC-AAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATCATTTGTTGAAGTGTTTCCAAAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATTCAGAAGAATGAGTCTCATCTTGATGTCGATTGTGGAAAAGCCAGTAAAACCAGTTGCACATCTAACAAAAGAAAGTCCGAATTTCTATGGGATCATTTTGATGCTTG]
[+] EMBL CD082754 [TCGAGCCAATAATTCGGCACGAGGGCAAAAATACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCCACAGTGGTACATTTTATCTTTCCCTATTTTCCAGTGCAACTATGTCATCTACTCTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATGATGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATCATTTGTTGAAGTGTTTCC AAACAAGAATGTTTGTTGTCACTTCATGAAA ]
[+] EMBL CD083616 [ TGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATTTAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCTCCACAATTCATCGAACATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCCACAGTGGTACATTTTATCTTTCCCTATTTTCCAGTGCAACTATGTCATCTACTCTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATG TGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATC ]
[+] EMBL CD084273 [ CTTAATGTACCCTCTGAAATGTCACCTATATTATGGCCATTTGCTGCTATCCTTTTGGATAGAACTAACGACAACTGTCTTGATGACCATACGAAAAAAATAATACATAAGATACAGGAAATAAGCAATGATGTGGACCCATTAAGGGACAATGATGGTCTGGTTACTGTAATAAACCAGTGTATACCGCGTGGAGCCGAATCATTTGTTGAAGTGTTTCCAAAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATCATTTGTTGAAGTGTTTCCAAAACAAGAATGTTTGTTGTCACTTCATGAAAGTATAAGGCCTGGAGTATGGTACATTGATAATGTAAATAGATGGATTGATGGAATTCAGAAGAATGAGTCTCATCTTGATGTCGATTGTGGAAAAGCCAGTAAAACCAGTTGCACATCTAACAAAAGAAAGTCCGAATTTCTATGGGATCATTTTGATGCTTG]
consensusID : consensus_9265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[AAGGTTTATTTTACTTAAAAGAGTTATTAGAGAGAAAGTGTACAGAAGAAATGTATAAAAATACATTACGATAAAGTGATCTTTGAAAATCAAGAGGTACTTGTTCCTGAGATGATTTGAGTAGAGTTCTCGACCAACAAGCATCAAAATGATCCCATAGAAATTCGGACTTTCTTTTGTTAGATGTGCAACTGGTTTTACTGGCTTTTCCACAATCGACATCAAGATGAGACTCATTCTTCTGAATTCCATCAATCCATCTATTTACATTATCAATGGACCATACTCCAGGCCTTATACTTTCATGAAGTGACAACAAACATTCTTGTTTTGGAAACACTTCAACAAATGATTCGGCTCCACGCGGTATACACTGGTTTATTACAGTAACCAGACCATCATTGTCCCTTAATGGGTCCACATCATTGCTTATTTCCTGGATCTTATGTATTATTTTTTTCGTATGGGCATCAAGACAGTTGTCGTTAGTTCTATCCAAAAGGATAGCAGCAAATGGCCATAATATAGGTGACATTTCAGAGGGTAC]
[+] EMBL CD076344 [AAGGTTTATTTTACTTAAAAGAGTTATTAGAGAGAAAGTGTACAGAAGAAATGTATAAAAATACATTACGATAAAGTGATCTTTGAAAATCAAGAGGTACTTGTTCCTGAGATGATTTGAGTAGAGTTCTCGACCAACAAGCATCAAAATGATCCCATAGAAATTCGGACTTTCTTTTGTTAGATGTGCAACTGGTTTTACTGGCTTTTCCACAATCGACATCAAGATGAGACTCATTCTTCTGAATTCCATCAATCCATCTATTTACATTATCAATGGACCATACTCCAGGCCTTATACTTTCATGAAGTGACAACAAACATTCTTGTTTTGGAAACACTTCAACAAATGATTCGGCTCCACGCGGTATACACTGGTTTATTACAGTAACCAGACCATCATTGTCCCTTAATGGGTCCACATCATTGCTTATTTCCTGGATCTTATGTATTATTTTTTTCGTATGGGCATCAAGACAGTTGTCGTTAGTTCTATCCAAAAGGATAGCAGCAAATGGCCATAATATAGGTGACATTTCAGAGGGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9265#0 CTTCAATATCTCTATTGACGGGGCACGAATTCGGTTGTATTTGCTTGTTACTGTTTTATA 60
consensus_9265#1 ------TCGAGCCAATAATTCGGCACGAGGGCAAAAATACTTAGTCGA-GCTGTCATATG 53
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 A----CCATCTCAAGAAATCATTATAACAATG--CAATATATACCAACCTATACATGATA 114
consensus_9265#1 GGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACTTAGTCGAGCCTTAAACTGGTC 113
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 TGTCAATCA-TGGAAATCTAGT-TTATTGATA-TGCAGAGCATTTTATTGGATATAATAT 171
consensus_9265#1 CATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCAATCTCTATCTGGGGAGGAAGT 173
consensus_9265#2 ------------------------------------AAGGTTTATTTTACTTAAAAGAGT 24
* * * *
consensus_9265#0 TATCAGCATCATTCCTAACAACATTCTGTCATAGTATAAAAATACGTCTGATTTTACTGT 231
consensus_9265#1 TGTGAATA--------AGTTGAATTCTAGTTTGAAGTGTGGA-ATATTTAGTTCAGGTGA 224
consensus_9265#2 TATTAGAGA-------GAAAGTGTACAGAAGAAATGTATAAAAATACATTAC------GA 71
* * * * * * * * * *
consensus_9265#0 TTAACCAAACGCCCGCCTGTCAAAGATAGCCCATGGTTAAAAGCAAAGTAATATTGATGC 291
consensus_9265#1 T-AACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGAGATTCT----C 279
consensus_9265#2 T-AAAGTGATCTTTGAAAATCAAGAGGTACTTGTTCCTGAGATGATTTGAGTAGAG--TT 128
* ** * * * * * * *
consensus_9265#0 CAGGATTACCAGGTTGGGGCTTGACCGATGGGTACTGGGAAAGTGCACTAGACAGTTCCA 351
consensus_9265#1 CACAATT--CA---TCGAAC---ATTAAGGGCTCCTTGAAACGTGTTCCGGATTTTATCC 331
consensus_9265#2 CTCGACCAACA------AGCATCAAAATGATCCCATAGAAATTCGGACTTTCTTTTGTTA 182
* * ** * * * * ** * * *
consensus_9265#0 TTATTCCCACCAATTTATCAATCTCATGTGTTGACCCCGCATCTATAGCTTCACATCACG 411
consensus_9265#1 ACAGTGGTAC-ATTTTATCTTTCCC-TAT-TTTCCAGTGCAACTATGTCATCTACTCTTA 388
consensus_9265#2 GATGTGCAACTGGTTTTACTGGCTTTTCCACAATCGACATCAAGATGAGACTCATTCTTC 242
* ** *** * * * * ** **
consensus_9265#0 ACAGAGCTTGCGAAATATTTGCACAGATAACCGGTACAT--TGGTGGATTATGGAT-TAG 468
consensus_9265#1 ATGTACCCTCTGAAATGTC-ACCTATATTATGGCCATTTGCTGCTATCCTTTTGGA-TAG 446
consensus_9265#2 TGAATTCCATCAATCCATCTATTTACATTATCAATGGAC-----CATACTCCAGGCCTTA 297
* * * * ** * * * *
consensus_9265#0 GACATTCAA-AATTTTTTGGACATTCCCGCTGGGGTAGGGATTATAGTAAAACACCTCCA 527
consensus_9265#1 AACTAACGACAACTGTCTTGATGACCATAC-GAAAAAAATAATACA-TAAGATACAGGAA 504
consensus_9265#2 TACTTTCATGAAGTGAC--AACAAACATTCTTGTTTTGGAAACACTTCAACAAATGATTC 355
** * ** * * * * * * ** * *
consensus_9265#0 CTGTATTTAGAATGGGGACCCTCAAACCCCATTCACCTTGTGTGTCATTCTACTGCCATA 587
consensus_9265#1 ATA-AGCAATGATGTGGACCCATTAA-----GGGACAATGATGGTCTGGTTACTGTAATA 558
consensus_9265#2 GGCTCCACGCGGTATACACTGGTTTATTACAGTAACCA-GACCATCATTGTCCCTTAATG 414
* ** * ** * ** * * **
consensus_9265#0 AATACA-GCCAGAGTTCTCCAAAGACTTCTCG-AAATCAATTTTTGGAATAAGG--AAAC 643
consensus_9265#1 AA------CCAGTGTATACCGCGTGGAGCC---GAATCATTTGTTGAAGTGTTTCCAAAC 609
consensus_9265#2 GGTCCACATCATTGCTTATTTCCTGGATCTTATGTATTATTTTTTTC-GTATGGG-CATC 472
** * * ** * ** ** * * *
consensus_9265#0 AAGTGCTAAGTGGATTTTGTCAATTACTTCCATTAATGGTGCACTCAATGAATCTGCTGT 703
consensus_9265#1 AAG-----AATGTTTGTTGTCACTT-----CATGAAAGTATAAGGCCTGGAGTATGGTAC 659
consensus_9265#2 AAG------ACAGTTGTCGTTAGTTCTATCCAAAAGGATAGCAGCAAATGGCCATAATAT 526
*** * * ** * ** ** * * * * *
consensus_9265#0 ATCAGATGTGATTAATAAGGAAATTTTACATCTGATCAACGGAAACTTTATGTGTAAAGA 763
consensus_9265#1 ATT-GATAATGTAAATAGATGGATTG---ATGGAATCATTTG----TTGAAGTGTTTCCA 711
consensus_9265#2 AGGTGACATTTCAGAGGGTAC--------------------------------------- 547
* ** *
consensus_9265#0 ATGCAAAAATCTTGGTTGTCCAGCTTGTATCCATACAAAGGTCCAAAAGGCAGCAAAAAT 823
consensus_9265#1 AAACAAGAATGTTTGTTGTC-ACTTCATGAAAGTATAA-GGCCTGGAGTATGGTACAT-T 768
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 ACTTAGTCGAGCTGTCATATGGGCGGCCACGTCAAAACTGAAACTAGACTCTGAACAACT 883
consensus_9265#1 GATAATGTAAATAGATGGATTGATGGAATTCAGAAGAATGAGTCTCATCTTGATGTCGAT 828
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 TAGTCGAGCCTTAAACTGGTCCATAGGTCACTGGGTTTCTGATGCTGGTGATAGTCCTCA 943
consensus_9265#1 T-GTGGAA----AAGCCAGT--AAAACCAGTTGCACATCTAA--CAAAAGAAAGTCCG-A 878
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 ATCTCTATCTGGGGAGGAAGTTGTGAATAAGTTGAATTCTAGTTTGAAGTGTGGAATATT 1003
consensus_9265#1 ATTTCTAT---GGGATCATTTTGATGCTTG------------------------------ 905
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 TAGTTCAGGTGATAACATAATTTATGATAATACACGGGAGGGTATTTCCAAGCTTGAAGA 1063
consensus_9265#1 ------------------------------------------------------------
consensus_9265#2 ------------------------------------------------------------
consensus_9265#0 GATTCTCCACAATTCATCGAACATTAAGGGCTCCTTG 1100
consensus_9265#1 -------------------------------------
consensus_9265#2 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||