cluster # 9267

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Schistosoma mansoni
cluster # 9267 cluster # 9267 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9267#0 length = 751 sequences # 8

consensus_9267#1 length = 375 sequences # 1

consensusID : consensus_9267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 751
fasta sequence

                              [TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCATCTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTCAAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC]

[+] EMBL CD069761             [TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCATCTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTCAAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCGCGAACACTTGTTCCAGTACTTGGTGGCTATTCAGTTACA                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD181590             [                                                                                                                                                                                                                                                                                                                                     AATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACAAACACTTGTTCCAGTACCTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTT                                                  ]
[-] EMBL CD181445             [                                                                                                                                                                                                                                                                                                                                       aTACACGAAATAGTACTGGTCAA TTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTNTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC]
[-] EMBL CD181355             [                                                                                                                                                                                                                                                                                                                                                        tGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTT                      ]
[-] EMBL CD066570             [                                                                                                                                                                                                                                                                                                                                                                 ATTATAGGAGAATATAGTCACCGGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACT                                                                                                                                                                                                                                      ]
[+] EMBL CD201167             [                                                                                                                                                                                                                                                                                                                                                                             TATAGTCAACCGTATGCAAGTGTTTCGCAAATGATCTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATG                                                                                                                                                                                                                ]
[-] EMBL CD181488             [                                                                                                                                                                                                                                                                                                                                                                                                                                 CACTGTTTCCAGTACTTAGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC]
[-] EMBL CD170300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAA                                                                                                           ]




>consensus_9267#0
TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCAT
CTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTC
AAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAAC
CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG
AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA
AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG
GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACAC
TTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCT
AATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCA
ATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCT
ATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCT
TACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATT
ATCACGTTTTCTGTTTATTTTCTTACTATTC

consensusID : consensus_9267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGAGTCACAAATAGGACG]

[-] EMBL CD066569             [CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGAGTCACAAATAGGACG]




>consensus_9267#1
CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGA
TCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGT
GAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAA
ATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGT
GTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCA
GTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGA
GTCACAAATAGGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9267#0      TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCAT 60
consensus_9267#1      ------------------------------------------------------------
                                                                                  

consensus_9267#0      CTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTC 120
consensus_9267#1      ------------------------------------------------------------
                                                                                  

consensus_9267#0      AAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAAC 180
consensus_9267#1      --------------------------CGTCATTTGGAAACATTGCCACTTGAAGAACAAC 34
                                                * ********************************

consensus_9267#0      CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG 240
consensus_9267#1      CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG 94
                      ************************************************************

consensus_9267#0      AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA 300
consensus_9267#1      AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA 154
                      ************************************************************

consensus_9267#0      AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG 360
consensus_9267#1      AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG 214
                      ************************************************************

consensus_9267#0      GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACAC 420
consensus_9267#1      GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACAC 274
                      ***************************************** ******************

consensus_9267#0      TTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCT 480
consensus_9267#1      TTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCT 334
                      ***** ****  **** **  *  *******  ***  ****    * *  * * * ***

consensus_9267#0      AATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCA 540
consensus_9267#1      AAGATGCAGGTAC----ATCAAGCTGACGAGTCACA--AATAGGACG------------- 375
                      **    *   * *    ** **    *    ***    * **   *              

consensus_9267#0      ATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCT 600
consensus_9267#1      ------------------------------------------------------------
                                                                                  

consensus_9267#0      ATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCT 660
consensus_9267#1      ------------------------------------------------------------
                                                                                  

consensus_9267#0      TACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATT 720
consensus_9267#1      ------------------------------------------------------------
                                                                                  

consensus_9267#0      ATCACGTTTTCTGTTTATTTTCTTACTATTC 751
consensus_9267#1      -------------------------------