|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 751 fasta sequence
[TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCATCTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTCAAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC]
[+] EMBL CD069761 [TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCATCTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTCAAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCGCGAACACTTGTTCCAGTACTTGGTGGCTATTCAGTTACA ]
[-] EMBL CD181590 [ AATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACAAACACTTGTTCCAGTACCTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTT ]
[-] EMBL CD181445 [ aTACACGAAATAGTACTGGTCAA TTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTNTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC]
[-] EMBL CD181355 [ tGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTT ]
[-] EMBL CD066570 [ ATTATAGGAGAATATAGTCACCGGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACT ]
[+] EMBL CD201167 [ TATAGTCAACCGTATGCAAGTGTTTCGCAAATGATCTATCATTATGCACGAACACTTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATG ]
[-] EMBL CD181488 [ CACTGTTTCCAGTACTTAGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCTTACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATTATCACGTTTTCTGTTTATTTTCTTACTATTC]
[-] EMBL CD170300 [ AACGTATCTAATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCAATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCTATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAA ]
consensusID : consensus_9267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGAGTCACAAATAGGACG]
[-] EMBL CD066569 [CGTCATTTGGAAACATTGCCACTTGAAGAACAACCATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAGAAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTAAACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAGGAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACACTTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCTAAGATGCAGGTACATCAAGCTGACGAGTCACAAATAGGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9267#0 TTGCCCCCCCTTCTCATTGTACCAGTTCTATGATACAGGTGTTTGATCAGTCACCTTCAT 60
consensus_9267#1 ------------------------------------------------------------
consensus_9267#0 CTAATGTTAATTTACATCATTCAATGAATCCAGTTAGTAAGAATAAATTGTTATCTAGTC 120
consensus_9267#1 ------------------------------------------------------------
consensus_9267#0 AAAATAGCCTACCGAAGGGTCTACCTCCTCATTTGGAAACATTGCCACTTGAAGAACAAC 180
consensus_9267#1 --------------------------CGTCATTTGGAAACATTGCCACTTGAAGAACAAC 34
* ********************************
consensus_9267#0 CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG 240
consensus_9267#1 CATGGTTTCATCCGTTATTAACAAGATCAGAAGCTGAAGAACTAATACGCAATGAACCAG 94
************************************************************
consensus_9267#0 AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA 300
consensus_9267#1 AAGGTAGTTTTCTTGTTCGTCCCAGTGAAACATGTCCTAATGATTTTTCGTTAACTATTA 154
************************************************************
consensus_9267#0 AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG 360
consensus_9267#1 AACATAAATCCTTCTTACATATGAAAATTACACGAAATAGTACTGGTCAATTTATTCTAG 214
************************************************************
consensus_9267#0 GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTTATCATTATGCACGAACAC 420
consensus_9267#1 GAGAATATAGTCAACCGTATGCAAGTGTTTCGCAAATGATTCATCATTATGCACGAACAC 274
***************************************** ******************
consensus_9267#0 TTGTTCCAGTACTTGGTGCCTATTCAGTTACACTGACACATCCTGTATGTAAACGTATCT 480
consensus_9267#1 TTGTTACAGTGTTTGGAGCGAACGCAGTTACGTTGAAGCATCAGAGAGGATATCATCTCT 334
***** **** **** ** * ******* *** **** * * * * * ***
consensus_9267#0 AATCATCTTATTCTGTTATTAATTCTATTGTTCATCTCACTACTGCTGAATCCTGATGCA 540
consensus_9267#1 AAGATGCAGGTAC----ATCAAGCTGACGAGTCACA--AATAGGACG------------- 375
** * * * ** ** * *** * ** *
consensus_9267#0 ATGACTCTGGCTACTCCGTCAGTTTTTCTTGCCTTGTGACTTTTGTCTGCTGCTCCTTCT 600
consensus_9267#1 ------------------------------------------------------------
consensus_9267#0 ATCACTACTACCGCTTTATTTGTTTAAGAGTTTAGTGCTATCAATCTTTTATCAGTCGCT 660
consensus_9267#1 ------------------------------------------------------------
consensus_9267#0 TACGTCCCTTTTTTGTGTACTGTTTTGTTGTTCCTTCTCTTCACTGATCCTCAGCTGATT 720
consensus_9267#1 ------------------------------------------------------------
consensus_9267#0 ATCACGTTTTCTGTTTATTTTCTTACTATTC 751
consensus_9267#1 -------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||