These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 852 fasta sequence [TCGGCACGAGACATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA-ACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG-ACCCGGGTAATCAAAAAG-CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTAC-AAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCCCATGGCTTTGTTTGTTTTTAATCGGTATATTTCCACTTTTCACGAGATTTCAATACAGCAACTGTTGTGACATTTTGTTTC] [+] EMBL CD077552 [TCGGCACGAGGCATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTNTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAt ] [-] EMBL CD141804 [ ACATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACCTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGCTTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA A ] [+] EMBL CD201924 [ aggtcACATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAGGACAAAA ] [+] EMBL CD078387 [ CATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA ACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCANAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAANAAATGAAGGAGGAAAT ] [+] EMBL CD169382 [ GAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA ACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTAC AAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAA ] [+] EMBL CD060188 [ TATTAAGACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTACAAAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCC ] [-] EMBL CD072949 [ aTAA ACTGGA TCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTAC AAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCCCATGGCTTTGTTTGTTTTTAATCGGTATATTTCCACTTTTCACGAGATTTCAATACAGCAACTGTTGTGACATTTTGTTTC] [+] EMBL CD194530 [ ACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAGAACCCGGGTAATCAAAAAGCCCCGTCA ] consensusID : consensus_9270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [ATCCCCCGNNCTGCAAGAATTCGGCACGAGGTTTGTTGATGCCCAGNACTTCTCCCCAGGTTCACGGGGNANAATCCTCTACAGATTTTNAAGAGGCCATAAGCTTTGACACATTCTCGGAAAATAATGGAGGANAANAGAAACCANTTGAANACAAAAAACTANAANAANAATCNCTANCGGTTCAAGAAATTGAGGANCNAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAANCTCTTGAACTTTGTCCGTTTAAATGTGGCGTTNAACNCTCTGTNATTTATGCCAATANANCTGCATGTCATATTAAACTGGATTNTCCCNAANCANCAATCTTGGACTGNAATGAATCATTNAAATTTACAACCAGATTACGTCAAATGCTTGNAGC] [+] EMBL AI223466 [ATCCCCCGNNCTGCAAGAATTCGGCACGAGGTTTGTTGATGCCCAGNACTTCTCCCCAGGTTCACGGGGNANAATCCTCTACAGATTTTNAAGAGGCCATAAGCTTTGACACATTCTCGGAAAATAATGGAGGANAANAGAAACCANTTGAANACAAAAAACTANAANAANAATCNCTANCGGTTCAAGAAATTGAGGANCNAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAANCTCTTGAACTTTGTCCGTTTAAATGTGGCGTTNAACNCTCTGTNATTTATGCCAATANANCTGCATGTCATATTAAACTGGATTNTCCCNAANCANCAATCTTGGACTGNAATGAATCATTNAAATTTACAACCAGATTACGTCAAATGCTTGNAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9270#0 TCGGCACGAGACATGTCTTCATGTTCGGATGAG-TTTGTTGATGCCCAGGACTTCTCTCC 59 consensus_9270#1 --ATCCCCCGNNCTGCAAGAAT-TCGGCACGAGGTTTGTTGATGCCCAGNACTTCTCCCC 57 * * * ** ** * * * *** *************** ******* ** consensus_9270#0 AGGTTCACCAC-CAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCT 118 consensus_9270#1 AGGTTCACGGGGNANAATCCTCTACAGATTTTNAAGAGGCCATAAGCTTTGACACATTCT 117 ******** * ***************** ******* **** ************* consensus_9270#0 CGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCAC 178 consensus_9270#1 CGGAAAATAATGGAGGANAANAGAAACCANTTGAANACAAAAAACTANAANAANAATCNC 177 ***************** ** ***** ** ***** *********** ** ** **** * consensus_9270#0 TAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAA 238 consensus_9270#1 TANCGGTTCAAGAAATTGAGGANCNAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAA 237 ** ******************* * *********************************** consensus_9270#0 ATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTG 298 consensus_9270#1 ATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAANCTCTTG 297 ***************************************************** ****** consensus_9270#0 ACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCAT 358 consensus_9270#1 AACTTTGTCCGTTTAAATGTGGCGTTNAACNCTCTGTNATTTATGCCAATANANCTGCAT 357 * ************************ *** ****** ************* * ****** consensus_9270#0 GTCATATTAAACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAA-T 417 consensus_9270#1 GTCATATTAAACTGGATTNTCCCNAANCANCAATCTTGGACTGNAATGAATCATTNAAAT 417 ****************** **** ** ** ************* *********** ** * consensus_9270#0 TTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGAC 477 consensus_9270#1 TTACAACCAGATTACGTCAAATGCTTGNAGC----------------------------- 448 *************************** *** consensus_9270#0 AGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAGACCCGGGTAATCAA 537 consensus_9270#1 ------------------------------------------------------------ consensus_9270#0 AAAGCCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATG 597 consensus_9270#1 ------------------------------------------------------------ consensus_9270#0 AAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGT 657 consensus_9270#1 ------------------------------------------------------------ consensus_9270#0 CTGTCAACTGACAATTTCAAAGTACAAAAAAATCCTGAATCAGAAGGCTATTCCATAAAT 717 consensus_9270#1 ------------------------------------------------------------ consensus_9270#0 TTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCCCATGGC 777 consensus_9270#1 ------------------------------------------------------------ consensus_9270#0 TTTGTTTGTTTTTAATCGGTATATTTCCACTTTTCACGAGATTTCAATACAGCAACTGTT 837 consensus_9270#1 ------------------------------------------------------------ consensus_9270#0 GTGACATTTTGTTTC 852 consensus_9270#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||