|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 852 fasta sequence
[TCGGCACGAGACATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA-ACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG-ACCCGGGTAATCAAAAAG-CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTAC-AAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCCCATGGCTTTGTTTGTTTTTAATCGGTATATTTCCACTTTTCACGAGATTTCAATACAGCAACTGTTGTGACATTTTGTTTC]
[+] EMBL CD077552 [TCGGCACGAGGCATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTNTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAt ]
[-] EMBL CD141804 [ ACATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACCTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGCTTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA A ]
[+] EMBL CD201924 [ aggtcACATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAGGACAAAA ]
[+] EMBL CD078387 [ CATGTCTTCATGTTCGGATGAGTTTGTTGATGCCCAGGACTTCTCTCCAGGTTCACCACCAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCTCGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCACTAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA ACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCANAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAANAAATGAAGGAGGAAAT ]
[+] EMBL CD169382 [ GAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTGACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCATGTCATATTAA ACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTAC AAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAA ]
[+] EMBL CD060188 [ TATTAAGACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTACAAAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCC ]
[-] EMBL CD072949 [ aTAA ACTGGA TCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAATTTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAG ACCCGGGTAATCAAAAAG CCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATGAAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGTCTGTCAACTGACAATTTCAAAGTAC AAAAAAATCCTGAATCAGAAGGCTATTCCATAAATTTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCCCATGGCTTTGTTTGTTTTTAATCGGTATATTTCCACTTTTCACGAGATTTCAATACAGCAACTGTTGTGACATTTTGTTTC]
[+] EMBL CD194530 [ ACTTTGTTGGAAAGCAAGGACAGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAGAACCCGGGTAATCAAAAAGCCCCGTCA ]
consensusID : consensus_9270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[ATCCCCCGNNCTGCAAGAATTCGGCACGAGGTTTGTTGATGCCCAGNACTTCTCCCCAGGTTCACGGGGNANAATCCTCTACAGATTTTNAAGAGGCCATAAGCTTTGACACATTCTCGGAAAATAATGGAGGANAANAGAAACCANTTGAANACAAAAAACTANAANAANAATCNCTANCGGTTCAAGAAATTGAGGANCNAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAANCTCTTGAACTTTGTCCGTTTAAATGTGGCGTTNAACNCTCTGTNATTTATGCCAATANANCTGCATGTCATATTAAACTGGATTNTCCCNAANCANCAATCTTGGACTGNAATGAATCATTNAAATTTACAACCAGATTACGTCAAATGCTTGNAGC]
[+] EMBL AI223466 [ATCCCCCGNNCTGCAAGAATTCGGCACGAGGTTTGTTGATGCCCAGNACTTCTCCCCAGGTTCACGGGGNANAATCCTCTACAGATTTTNAAGAGGCCATAAGCTTTGACACATTCTCGGAAAATAATGGAGGANAANAGAAACCANTTGAANACAAAAAACTANAANAANAATCNCTANCGGTTCAAGAAATTGAGGANCNAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAAATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAANCTCTTGAACTTTGTCCGTTTAAATGTGGCGTTNAACNCTCTGTNATTTATGCCAATANANCTGCATGTCATATTAAACTGGATTNTCCCNAANCANCAATCTTGGACTGNAATGAATCATTNAAATTTACAACCAGATTACGTCAAATGCTTGNAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9270#0 TCGGCACGAGACATGTCTTCATGTTCGGATGAG-TTTGTTGATGCCCAGGACTTCTCTCC 59
consensus_9270#1 --ATCCCCCGNNCTGCAAGAAT-TCGGCACGAGGTTTGTTGATGCCCAGNACTTCTCCCC 57
* * * ** ** * * * *** *************** ******* **
consensus_9270#0 AGGTTCACCAC-CAGAATCCTCTACAGATTTTAAAGAGGCTGTAAGATTTGACACATTCT 118
consensus_9270#1 AGGTTCACGGGGNANAATCCTCTACAGATTTTNAAGAGGCCATAAGCTTTGACACATTCT 117
******** * ***************** ******* **** *************
consensus_9270#0 CGGAAAATAATGGAGGAGAAGAGAAAACAATTGAAGACAAAAAACTAGAAGAAGAATCAC 178
consensus_9270#1 CGGAAAATAATGGAGGANAANAGAAACCANTTGAANACAAAAAACTANAANAANAATCNC 177
***************** ** ***** ** ***** *********** ** ** **** *
consensus_9270#0 TAACGGTTCAAGAAATTGAGGAACGAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAA 238
consensus_9270#1 TANCGGTTCAAGAAATTGAGGANCNAAGGGATATTGCAGTTGCCACAAAAGATAAGGGAA 237
** ******************* * ***********************************
consensus_9270#0 ATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAAGCTCTTG 298
consensus_9270#1 ATGCTTTTTTTAAGTCTGGCTCTTTTAATGAGGCTTTAATGAAATACACGGAANCTCTTG 297
***************************************************** ******
consensus_9270#0 ACCTTTGTCCGTTTAAATGTGGCGTTGAACGCTCTGTGATTTATGCCAATAGAGCTGCAT 358
consensus_9270#1 AACTTTGTCCGTTTAAATGTGGCGTTNAACNCTCTGTNATTTATGCCAATANANCTGCAT 357
* ************************ *** ****** ************* * ******
consensus_9270#0 GTCATATTAAACTGGATTCTCCCGAAGCAGCAATCTTGGACTGTAATGAATCATTGAA-T 417
consensus_9270#1 GTCATATTAAACTGGATTNTCCCNAANCANCAATCTTGGACTGNAATGAATCATTNAAAT 417
****************** **** ** ** ************* *********** ** *
consensus_9270#0 TTACAACCAGATTACGTCAAATGCTTGGAGCGACGTGCCACTTTGTTGGAAAGCAAGGAC 477
consensus_9270#1 TTACAACCAGATTACGTCAAATGCTTGNAGC----------------------------- 448
*************************** ***
consensus_9270#0 AGACTGTCAGACGCACTTGAAGACTATCAAAAAATTTTACGGTTAGACCCGGGTAATCAA 537
consensus_9270#1 ------------------------------------------------------------
consensus_9270#0 AAAGCCCGTCATGCGTGTGCTACCCTTCCGGAGCGTATCCGTATTCAAAATGAAAAAATG 597
consensus_9270#1 ------------------------------------------------------------
consensus_9270#0 AAGGAGGAAATGTTTGGTCAATTGAAGCAGCTAGGTAATCTGATCTTAAAACCTTTTGGT 657
consensus_9270#1 ------------------------------------------------------------
consensus_9270#0 CTGTCAACTGACAATTTCAAAGTACAAAAAAATCCTGAATCAGAAGGCTATTCCATAAAT 717
consensus_9270#1 ------------------------------------------------------------
consensus_9270#0 TTTGTTCAAAATGCTGCACCCTCACCTCAGTGAACACTTGTAAAAAAATACTCCCATGGC 777
consensus_9270#1 ------------------------------------------------------------
consensus_9270#0 TTTGTTTGTTTTTAATCGGTATATTTCCACTTTTCACGAGATTTCAATACAGCAACTGTT 837
consensus_9270#1 ------------------------------------------------------------
consensus_9270#0 GTGACATTTTGTTTC 852
consensus_9270#1 ---------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||