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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 769 fasta sequence
[TTCGGCACGACGGGACGATTCTATTCGTTATTGGACCCACTTATGCTAGAATATATTCCAATTATTGCTTCTGTAGCTGAACACCAGCCGACCGCTTGGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC-AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAATACAGCATTGTATATGGGTTATATCATCGTCATATTCTCATCCATCGATTGTATTAGAAACTGTAGATAGTTTTGGTAATCGTCATATATTAGATGATTATAGAGAAGCATATTATTGGCTTAGAGAGAATACAAAGGCTGATGCTAAAATTATGTCTTGGTGGGATTACGGCTATCAGATTACTGCTATTGCTAATCGTACTGTGCTTGTGGACAATAATACATGGAATAATACTCATATTGGTCGTGTGGGTCAAGCTATGGCATCATCTGAAGAGGAAGCTTATGANATTATGAAAGACTTAGATGTTGAT]
[+] EMBL CD081152 [TTCGGCACGACGGGACGATTCTATTCGTTATTGGACCCACTTATGCTAGAATATATTCCAATTATTGCTTCTGTAGCTGAACACCAGCCGACCGCTTGGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAATACAGCATTGTATATGGGTTATATCATCGTCATATTCTCATCCATCGATTGTATTAGAAACTGTAGATAGTTTTGGTAATCGTCATATATTAGATGATTATAGAGAAGCATATTATTGGCTTAGAGAGAATACAAAGGCTGATGCTAAAATTATGTCTTGGTGGGATTACGGCTATCAGATTACTGCTATTGCTAATCGTACTGTGCTTGTGGACAATAATACATGGAATAATACTCATATTGGTCGTGTGGGTCAAGCTATGGCATCATCTGAAGAGGAAGCTTATGANATTATGAAAGACTTAGATGTTGAT]
[+] EMBL CD198852 [ GGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAAT ]
[+] EMBL CD198884 [ GGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTACAAAAAACACCAAGT AACTTACCGCAGCTAATGGATATCCATCTATCCCNAATAG ]
[+] EMBL CD199095 [ GGAGTTGTTATTATTTCGATCTTCATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGCTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGNTAATCTTAATGCACCAGATAGTCAAAGTAC AAAA ]
[+] EMBL CD179915 [ CGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTNTATAAAAATGCAGTCCAAGA ]
[+] EMBL CD179930 [ CGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGATGCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTTCGGCTTATCTTAGTATTAGCACCGATAATGTGTATTTTGGGCGCGATTGGAGTTTCTGGAATTTTGAAGTCATTTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTAC AAAAACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCCCAAATAGTAATAAACTTTATAAAAATGCAGTCCA ]
consensusID : consensus_9274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CGAACAGTTATTAAAAGTCATCAGTTTCCACTTGCCAAAAAGTTGTCACTTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAGTGTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTGCATGATGTACCATGTTGTCCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTAAGGGTTTCTTATTTCTCTGTTCTTCCATTCATTAACTTCAAATGATTTCAGCCTATTCTTTTCATAGAAATTTGTTCGCAATACAATACAAGTGAAACATGCCAAAATGCAACGACGGCGAATATGACATGTATTTGGTGTCAAAAAGGGAAGAAATGTATAGAAAGTAACAATCCGGACACTCATAGCTTGAAAGTCAATGACTGCCGTGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAATTTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAATCGGCATGTTAGCCATCCTCAGTGACTA]
[+] EMBL CD154396 [CGAACAGTTATTAAAAGTCATCAGTTTCCACTTGCCAAAAAGTTGTCACTTGTTCTTTGTACTCAAAGTAATTTCATTCAATCCAAAAATGCAGTGTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTGCATGATGTACCATGTTGTCCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAAATCACCATCACGTCATTGAGTAATATTTAAGGGTTTCTTATTTCTCTGTTCTTCCATTCATTAACTTCAAATGATTTCAGCCTATTCTTTTCATAGAAATTTGTTCGCAATACAATACAAGTGAAACATGCCAAAATGCAACGACGGCGAATATGACATGTATTTGGTGTCAAAAAGGGAAGAAATGTATAGAAAGTAACAATCCGGACACTCATAGCTTGAAAGTCAATGACTGCCGTGTTGAGGTTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAATTTCACATTCTGAGCANATGTTTTTACTGGAAAAAATACTTTCATTGCTATCAATAACAATCGGCATGTTAGCCATCCTCAGTGACTA]
consensusID : consensus_9274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[AATGTTTTATTATTCAAAATAGGGACGGTGGGGATTTGTAATGCCTAAAAAAACAAACTGAAGAATAGGTTACAATATCAAGATTCAGAGGTCAAAAATTTGTCATAATTTTCTTCAGATAAAAGGTTCTTCACTTGTGATAAGTCCGAAAGTCGAAGCTTGAAAAGCCACCCTTCATCTGAAGGGGACTGATTGATTATTTTTGTACTTTTTTCAACATCTGAATTGACTTCAATTATGGTACCTGACACTGGAGAGTATACTTCGCTAACAGCCTTGACTGATTCGACAACGGCACATTGATCTACTTTTAGTGGTCATAAAACCAGGAAATACCATTAACATTGACCTTGTCTCCAACAGCAGGTAATTCAACATACACTATATCACCCAGATTCTGTTCAGCATATTTAGAAATTCCTACAGTCCCAACATCACCATTAACTTTGATCCACTCGTGTTTTTGGGTATAGTAGACATCTGCTTTTATTCAAAAAGATATTGACTTACTGGAGGTCAGTTTACAACTTGTGCTGAAAGTTCTACTCA]
[+] EMBL CD076696 [AATGTTTTATTATTCAAAATAGGGACGGTGGGGATTTGTAATGCCTAAAAAAACAAACTGAAGAATAGGTTACAATATCAAGATTCAGAGGTCAAAAATTTGTCATAATTTTCTTCAGATAAAAGGTTCTTCACTTGTGATAAGTCCGAAAGTCGAAGCTTGAAAAGCCACCCTTCATCTGAAGGGGACTGATTGATTATTTTTGTACTTTTTTCAACATCTGAATTGACTTCAATTATGGTACCTGACACTGGAGAGTATACTTCGCTAACAGCCTTGACTGATTCGACAACGGCACATTGATCTACTTTTAGTGGTCATAAAACCAGGAAATACCATTAACATTGACCTTGTCTCCAACAGCAGGTAATTCAACATACACTATATCACCCAGATTCTGTTCAGCATATTTAGAAATTCCTACAGTCCCAACATCACCATTAACTTTGATCCACTCGTGTTTTTGGGTATAGTAGACATCTGCTTTTATTCAAAAAGATATTGACTTACTGGAGGTCAGTTTACAACTTGTGCTGAAAGTTCTACTCA]
consensusID : consensus_9274#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence
[TGGTTGCTGTAGATAGGTTTAGAATAAGTTTAGATGTATGAGTACAATCCGTGTAGAATACGAGAACCTTCCCAGAAGCTTCAACAGGCTTGACGAAAAATTTGTTGCGAGAATAGGATAACTTTTGTATCTCATTCCATGGAAAAGTAACCTTTGGTGCTAATTGGTTGTCGTATTCATAAATATTCAAACCTAAAGCATCAATACCAAGCCATAGGTCCGTCTTTTTCTCATTTTTTATTTTAAAAAATGTAACTCCGAACATTTCTAGATCTTGAGCAATTCTTAGATACTCCTTTACTGCATCGTCCTTGGACATATTTTTATGTGCAGATGCACAATTCAACACTTTAGCTTCCCATTCTTCATTTGATTTAAATAATGGGAAATTTTCATTCTTGGGAATTAAACCAACTGACTTGGACGAAATATTAAAGTTCCCCTTCAGACAAGTGTATTCTTTTACTTCGGAGTTAGATGACACAGATGAATTGTTAACTTCGTCATCAGAAATCTGAGTTGAACTTCGAGAAGGTACCTATGACG]
[+] EMBL CD068424 [TGGTTGCTGTAGATAGGTTTAGAATAAGTTTAGATGTATGAGTACAATCCGTGTAGAATACGAGAACCTTCCCAGAAGCTTCAACAGGCTTGACGAAAAATTTGTTGCGAGAATAGGATAACTTTTGTATCTCATTCCATGGAAAAGTAACCTTTGGTGCTAATTGGTTGTCGTATTCATAAATATTCAAACCTAAAGCATCAATACCAAGCCATAGGTCCGTCTTTTTCTCATTTTTTATTTTAAAAAATGTAACTCCGAACATTTCTAGATCTTGAGCAATTCTTAGATACTCCTTTACTGCATCGTCCTTGGACATATTTTTATGTGCAGATGCACAATTCAACACTTTAGCTTCCCATTCTTCATTTGATTTAAATAATGGGAAATTTTCATTCTTGGGAATTAAACCAACTGACTTGGACGAAATATTAAAGTTCCCCTTCAGACAAGTGTATTCTTTTACTTCGGAGTTAGATGACACAGATGAATTGTTAACTTCGTCATCAGAAATCTGAGTTGAACTTCGAGAAGGTACCTATGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9274#1 ------------------------------------------------------------
consensus_9274#3 ------------------------------------------------------------
consensus_9274#2 ------------------------------------------------------------
consensus_9274#0 TTCGGCACGACGGGACGATTCTATTCGTTATTGGACCCACTTATGCTAGAATATATTCCA 60
consensus_9274#1 ------------------------------------------------------------
consensus_9274#3 ------------------------------------------------------------
consensus_9274#2 ------------------------------------------------------------
consensus_9274#0 ATTATTGCTTCTGTAGCTGAACACCAGCCGACCGCTTGGAGTTGTTATTATTTCGATCTT 120
consensus_9274#1 ----------------------------------CGAACAGTTATTAAAAGTC-----AT 21
consensus_9274#3 -----------------------------------TGGTTGCTGTAGATAGGTTTAGAAT 25
consensus_9274#2 ------------------------------------------------------------
consensus_9274#0 CATTTCTTAACGGTAATGTTTCCTGTGGGTTTATACTATTGCTTCCGGAAATTGACAGAT 180
consensus_9274#1 CAGTTTCCACTTGCCAAAA-AGTTGTCACTTGTTCTTTGTAC--TCAAAGTAATTTCATT 78
consensus_9274#3 AAGTTTAGATGTATGAGTACAATCCGTGTAGAATACGAGAACCTTCCCAGAAGCTTCAAC 85
consensus_9274#2 -------AATGTTTTATTA--TTCAAAATAGGGACGGTGGGGATTTGTAAT-GCCTAAAA 50
consensus_9274#0 GCTAGTATCTTTGCAATAATATATGGCATTACAAGCGTTTACTTTTCGGGTGTTATGGTT 240
* * * * *
consensus_9274#1 CAATCCAAAAATGCAGT-GTTGAAATAGAAGAGAAATTGAAGGTGTACTGAGTTTTGCAT 137
consensus_9274#3 AGGCTTGACGAAAAATTTGTTGCGAGAATAGGATAACTTTTGTATCTCATTCCATGGAAA 145
consensus_9274#2 AAACAAACTGAAGAATAGGTTACAATATCAAGA----TTCAGAGGTCAAAAATTTGTCAT 106
consensus_9274#0 CGGCTTATCTTAGTATTAGCACCGATAATGTGTA---TTTTGGGCGCGATTGGAGTTTCT 297
* * * * * *
consensus_9274#1 GATGTACCATGTT------GTCCATTTTCCACCGAATGGATAAGTCACTTAACTCAGAA- 190
consensus_9274#3 AGTAACCTTTGGT------GCTAATTGGTTGTCGTATTCATAAATATTCAAACCTAAAGC 199
consensus_9274#2 AATTTTCTTCAGATAAAAGGTTCTTCACTTGTGATAAGTCCGAAAGTCGAAGCTTGAAAA 166
consensus_9274#0 GGAATTTTGAAGTCAT--TTTCAGTTAATCTTAATGCACCAGATAGTCAAAGTACAAAA- 354
* * * *
consensus_9274#1 ATCACCATCACGTCATTGAGTAATATTTAAGGGTTTCTTATTTCTCTGTTCTTCCATTCA 250
consensus_9274#3 ATCAATACCAAGCCATAGGTCCGTCTTT------TTCTCATTT-TTTATTTTAAAAAATG 252
consensus_9274#2 GCCACCCTTCATCTGAAGGGGACTGATTGA-----TTATTTTTGTACTTTTTTCAACATC 221
consensus_9274#0 ACACCAAGTAAACTTACCGCAGCTAATGGATATCCATCTATCC-CAAATAGTAATAAACT 413
* * * * * *
consensus_9274#1 TTAACTTCAAATGATTTCAG--CCTATTCTTTTCATAGAAATTTGTTCGCAATACAATAC 308
consensus_9274#3 T-AACTCCGAACATTTCTAGATCTTGAGCAATTCTTAGATACTCCTTTACTGCATCGTCC 311
consensus_9274#2 TGAATTGACTTCAATTATGGTACCTGACACTGGAGAGTATACTTCGCTAACAGCCTTGAC 281
consensus_9274#0 TTATAAAAATGCAGTCCAAGACTCAACTTATCCGTTCAAAAATACAGCATTGTATATGGG 473
* * * * * * *
consensus_9274#1 AAGTGAAACA----TGCCAAAATGCAACGACGGCGAATATGACATGTATTTGGTGTCAAA 364
consensus_9274#3 ---TTGGACA----TATTTTTATGTGCAGATGCACAATTCAACAC---TTTAGCTTCCCA 361
consensus_9274#2 TGATTCGACAACGGCACATTGATCTACTTTTAGTGGTCATAAAACCAGGAAATACCATTA 341
consensus_9274#0 TTATATCATCGTCATATTCTCATCCATCGATTGTATTAGAAACTGTAGATAGTTTTGGTA 533
* * ** * *
consensus_9274#1 AAGGGAAGAAATGTATAGAAAGTAACAATCCGGACACTCATAGCTTGAA--AGTCAATGA 422
consensus_9274#3 TTCTTCATTTG-ATTTAAATAATGGGAA-----ATTTTCATT-CTTGGG--AATTAA--A 410
consensus_9274#2 ACATTGACCTTGTCTCCAACAGCAGGTAATTCAACATACACTATATCACCCAGATTCTGT 401
consensus_9274#0 ATCGTCATATATTAGATGATTATAGAGAAGC--ATATTATTGGCTTAGAGAGAATACAAA 591
* * * * *
consensus_9274#1 CTGCCGTGTTGAGG--TTGGTAATTGGTAAACTTCATATGTCGTTTGCAATAACCTCAAA 480
consensus_9274#3 CCAACTGACTTGGA--CG---AAATATTAAAGTTCCCCTTCAGACAAGTGTATTCTTTTA 465
consensus_9274#2 TCAGCATATTTAGAAATTCCTACAGTCCCAACATCACCATTAACTTTGATCCACTCGTGT 461
consensus_9274#0 GGCTGATGCTAAAATTATGTCTTGGTGGGATTACGGCTATCAGATTACTGCTATTGCTAA 651
* *
consensus_9274#1 TTTCA--CATTCTGAGCANAT--GTTTTTACTGGAAAAAATACTTTCATTGCTATCAATA 536
consensus_9274#3 CTTCG--GAGTTAGATGACAC--AGAT------GAATTGTTAACTTCGTCATCAGAAATC 515
consensus_9274#2 TTTTG--GGTATAGTAGACATCTGCTTTTATTCAAAAAGATATTGAC-TTACTGGAGGTC 518
consensus_9274#0 TCGTACTGTGCTTGTGGACAATAATACATGGAATAATACTCATATTGGTCG-TGTGGGTC 710
* * * ** * * *
consensus_9274#1 ACAATCGGCATGTTA--GCCATCCTCAGTGACTA------------------------- 568
consensus_9274#3 TGAGTTGAACTTCGA--GAAGGTACCTATGACG-------------------------- 546
consensus_9274#2 AGTTTACAACTTGTGCTGAAAGTTCTACTCA---------------------------- 549
consensus_9274#0 AAGCTATGGCATCATCTGAAGAGGAAGCTTATGANATTATGAAAGACTTAGATGTTGAT 769
* * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||