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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 937 fasta sequence
[CATCATCATTCAAGAATTAAATCAATTGCATTTATTACTCATTTAAGTGCATTTGGTTTAAAGAATAAACGACGTCTATCACAATTAACAACCAAAAAATTGCATAAACTAAAATCAAATCCTACTAGTCCTAATGATGATTATAACAATAATCATAATTATTATAATAAATCTGGTCAATTAAATCCATTACCAATTACAGAAGTTTATGAATCAGAAAGTTATCATAATCCAAATATTATATCAGATAATTTTAATTTGAACACAATAGAATCATTTGATAATGATTACTTTTTATATAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATATACATATCATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAATAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGTTTAGGCAACAATCAATTAACAACACCATCAACTGGATATTATGCATCGAATAGAAGTTCTAGAGTATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCCCACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTGAAAATTCATTGCCTTCATTATCTAATGTGAATACAAAAACATCATCATCGTCACCAGTGACAAACATAATATCGTTGAATGAAAGGCGAACACATCAGTTACAACAACAACAACAGCAACAGAAAAACACTTCTTTCTCTTCATCATTACATAATACACCTTCAAATCATTCACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATCTATTTCATCTGTACCACCATCTCCACAAAACACAGCCAACAGATATG]
[+] EMBL CD187071 [CATCATCATTCAAGAATTAAATCAATTGCATTTATTACTCATTTAAGTGCATTTGGTTTAAAGAATAAACGACGTCTATCACAATTAACAACCAAAAAATTGCATAAACTAAAATCAAATCCTACTAGTCCTAATGATGATTATAACAATAATCATAATTATTATAATAAATCTGGTCAATTAAATCCATTACCAATTACAGAAGTTTATGAATCAGAAAGTTATCATAATCCAAATATTATATCAGATAATTTTAATTTGAACACAATAGAATCATTTGATAATGATTACTTTTTATATAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATATACATATCATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAATAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGT ]
[+] EMBL CD116522 [ TGATAATGATTACTTTTTATATAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATATACATATCATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAATAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGTTTAGGCAACAATCAATTAACAACACCATCAACTGGATATTATGCATCGAATAGAAGTTCTAGAGTATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCCCACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTGAAAATTCATTGCCTTCATTATCTAATGTGAATACAAAAACATCATCATCGTCACCAGTGACAAACATAATATCGTTGAATGAAAGGCGAACACATCAGTTACAACAACAACAACAGCAACAGAAAAACACTTCTTTCTCTTCATCATTACATAATACACCTTCAAATCATTCACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATCTATTTCATCTGTACCACCATCTCCACAA ]
[-] EMBL CD060284 [ ATTGTGCATCGAATAGAAGTTCTAGAGTATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCCCACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTGAAAATTCATTGCCTTCATTATCTAATGTGAATACAAAAACATCATCATCGTCACCAGTGACAAACATAATATCGTTGAATGAAAGGCGAACACATCAGTTACAACAACAACAACAGCAACAGAAAAACACTTCTTTCTCTTCATCATTACATAATACACCTTCAAATCATTCACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATCTATTTCATCTGTACCACCATCTCCACTAAACACAGCCAACAGATATG]
consensusID : consensus_9275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 662 fasta sequence
[ATCATAATGGTGACAGTTGAGAGAGGAAGAGTAAGAGTAAGTAGAACATAGAAAACAGATATTGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAAATATGAGTATTAATAAGAGACAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAAGAGAGCGTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACACAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTACTACTATTTAATTAGTAGGTGTATTATAGCAAAGCCAATATCATTGGTACTAATAGCAGAAGTATGTACATAGGTATGATGCATAAATAAGCAATAATAATAATAATCTAATTGCACTGGAAAAAAAACAATTCATAATCATAAAGGTACAGGATAAGAACTAAAGAATATTAATATTCAAGTACAGACTACATAGACGATACGAAAAACAT]
[+] EMBL CD139405 [ATCATAATGGTGACAGTTGAGAGAGGAAGAGTAAGAGTAAGTAGAACATAGAAAACAGATATTGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAAATATGAGTATTAATAAGAGACAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAAGAGAGCGTGTACAGTTTACGCAATAATAATCATGATAAAATCCATCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGATATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACACAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTA ]
[+] EMBL CD179104 [ AGTAGAACATAGAAAACAGATATTGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAGATATGAGTATTAATAAGAGACAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAAGAGAGCGTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACGCAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTACTACTATTTAATTAGTAGGTG ]
[+] EMBL CD067357 [ GTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATTAGTAAGCAATAACAGATGAGATAACGAATGGAACAACAACAACAACCACACACACAGACGAAAATAGCCAAAACAATAATCAAGTTTGACAAGATCACAATGTATATTACTACTATTTAATTAGTAGGTGTATTATAGCAAAGCCAATATCATTGGTACTAATAGCAGAAGTATGTACATAGGTATGATGCATAAATAAGCAATAATAATAATAATCTAATTGCACTGGAAAAAAAACAATTCATAATCATAAAGGTACAGGATAAGAACTAAAGAATATTAATATTCAAGTACAGACTACATAGACGATACGAAAAACAT]
[+] EMBL CD066971 [ GTGTACAGTTTACGCAATAATAATCATGATAAAATCCGTCGAAGTACAGTGACAGTATGTGAGTATACACAAACGCACACAGAGACAGGTTGAGAAAATTAAATAGAGAATAATAACACTACAGACATACAGCGATTATCTATCTATATAACTAGAAGACAATCGATAATT ]
consensusID : consensus_9275#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 255 fasta sequence
[TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTTGTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTCTAGTTATATAGATAGATAATCGCTGTATGTCTGTAGTGTTATTATTCTCTATTTAATTTTCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACATACTGTCACTGTACTTCGACGGATTTTATCATGATTATTATTGCGTAAACTGTACACGCTCTC]
[+] EMBL CD199276 [TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTTGTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTCTAGTTATATAGATAGATAATCGCTGTATGTCTGTAGTGTTATTATTCTCTATTTAATTTTCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACATACTGTCACTGTACTTCGACGGATTTTATCATGATTATTATTGCGTAAACTGTACACGCTCTC]
[+] EMBL CD199251 [TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTTGTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTCTAGTTATATAGATAGATAATCGCTGTATGTCTGTAGTGTTATTATTCTCTATTTAATTTTCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACATACTGTCACTGTGCTTCGACGGATTTTATCATGATTAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9275#0 CATCATCATTCAAGAATTAAATCAATTGCATTTATTACTCATTTAAGTGCATTTGGTTTA 60
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 AAGAATAAACGACGTCTATCACAATTAACAACCAAAAAATTGCATAAACTAAAATCAAAT 120
consensus_9275#1 ----------------------------------------------------------AT 2
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 CCTACTAGTCCTAATGATGATTATAACAATAATCATAATTATTATAATAAATCTGGTCAA 180
consensus_9275#1 CATAATGGTGACAGTTGAGAGAGGAAGAGTAAGAGTAAGTAGAACATAGAAAACAGATAT 62
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TTAAATCCATTACCAATTACAGAAGTTT-ATGAATCAGAAAGTTATCATAATCCAAATAT 239
consensus_9275#1 TGAGAATAATCTTTAAAAATGCAGTTCAGATAAATAAAAAAAATATGAGTATT--AATAA 120
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TATATCAGATAATTTTAATTTGAACACAATAGAATCATTTGATAATGATTACTTTTTATA 299
consensus_9275#1 GAGA-CAGAAGAACACAAATAAAAGAAAGCGAGGAAACAAGAGAA-GAGAGCG---TGTA 175
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TAGTTTACAAACAGCTGTATTCAATGGTTTTGTTCCATCAAATCCATTAAATCAACAATA 359
consensus_9275#1 CAGTTTAC--GCAATAATAATCA-TGATAAAATCCGTCGAAGTACAGTGA--CAGTA-TG 229
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TACATAT-CATGATTATTATAGAATGCCAGGTCGTCAGACAATACCAACTACAACTGCAA 418
consensus_9275#1 TGAGTATACACAAACGC-ACACAGAGACAGGTTG----AGAAAATTAAATAGAG----AA 280
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TAACATCAATACTTCATGAAAAGTTCAACCAATCATCATTTGGTGAAGATTTAAGTTTAG 478
consensus_9275#1 TAATAACACTAC------AGACATACAGCGATTATCTATCT-------ATATAA--CTAG 325
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 GCAACAATCAATTAACAACACCATCAACTGGATATTATGCATCGAATAGAAGTTCTAGAG 538
consensus_9275#1 AAGACAATCGATAATTAGTA--AGCAATAACAGATGAGATAACGAATGGAACAACAACAA 383
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TATTTTCACCTGAGTACAATATTAATAGTAATGATAACAGTAATCGTTTTAAATTTCCCC 598
consensus_9275#1 CAACCACACACACAGACGAAA---ATAGCCAAAACAATAATCAA-GTTTGACAAGATCAC 439
consensus_9275#2 -------------------------TGATGAAGAGAAAGAAGTGTTTTTCTGTTGCTGTT 35
* * * ** ***
consensus_9275#0 CACCTGGTCCACCAGTTGCTGGTTGGGTTAACCAATTTATTATCAGAACAAACACGCTTG 658
consensus_9275#1 AATGTATATTACTACT-----ATTTAATTAGTAGGTGTATTAT---AGCAAAGCC----- 486
consensus_9275#2 GTTGTTGTTGTTCCATTCGTTATCTCATCTGTTATTGCTTACTAATTATCGATTGTCTTC 95
* * * * * * * *
consensus_9275#0 AAAATTCATTGCCTT-CATTATCTAATGTGAATACAAAAACATCAT-CATCG-TCACCAG 715
consensus_9275#1 -AATATCATTGGTAC-TAATAGCAGAAGTATGTACATAGGTATGATGCATAAATAAGCAA 544
consensus_9275#2 TAGTTATATAGATAGATAATCGCTG-TATGTCTGTAGTGTTATTATTCTCTATTTAATTT 154
* ** * * * * * * * ** ** * * *
consensus_9275#0 TGACAAACATAATATCGTTGAA-TGAAAGGCGAACACATCA--GTTACAACAACA-ACAA 771
consensus_9275#1 TAATAATAATAATCTAATTGCACTGGAAAAAAAACAATTCATAATCATAAAGGTACAGGA 604
consensus_9275#2 TCTCAACCTGTCTCTGTGTGCGTTTGTGTATACTCACAT----ACTGTCACTGTACTTCG 210
* ** * * ** * ** * * *
consensus_9275#0 CAGCAACAGAAAAACACTTCTTTCTCTTCATC-ATTACATAATACACCTTCAAATCATTC 830
consensus_9275#1 TAAGAACTAAAGAATATTAATATTCAAGTACAGACTACATAGACGATACGAAAAACAT-- 662
consensus_9275#2 ACGGATTTTATCATGATTATTATT---GCGTAAACTGTACACGCTCTC------------ 255
* * * * * * * * * * *
consensus_9275#0 ACCAATCACAGCGATTGATATTATTGGTTTATCGAGTTCTATTACTATACCAAGTAGATC 890
consensus_9275#1 ------------------------------------------------------------
consensus_9275#2 ------------------------------------------------------------
consensus_9275#0 TATTTCATCTGTACCACCATCTCCACAAAACACAGCCAACAGATATG 937
consensus_9275#1 -----------------------------------------------
consensus_9275#2 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||