These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1056 fasta sequence [TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAGATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTATCTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCATTTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG] [+] EMBL CD127540 [TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAGATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTATCTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCATTTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTC ] [-] EMBL CD122209 [ AACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAG ] [+] EMBL CD127077 [ ACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACctacctat ] [+] EMBL CD116640 [ GACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGA ] [+] EMBL CD155856 [ AATCACTGTCAGTTGAATGGGTTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAAC ] [-] EMBL CD131234 [ CACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCC ] [+] EMBL CD147048 [ GGAAACTT ACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG] consensusID : consensus_9278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT] [-] EMBL CD066746 [TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT] consensusID : consensus_9278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCGTTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTAGTATAATGAGTTACGCCCATCATTTATTT] [+] EMBL CD090044 [GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCGTTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTAGTATAATGAGTTACGCCCATCATTTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9278#0 TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAG 60 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 ATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTAT 120 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 CTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCAT 180 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 TTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACG 240 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 GAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAG 300 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 TTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTG 360 consensus_9278#1 ------------------------------------------------------TAGACA 6 consensus_9278#2 -----------------------------------------------GACTTTTCAGATG 13 ** consensus_9278#0 GGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTG-TGCTGGTAGGA 419 consensus_9278#1 AGTTCGTAGTTA--GATT-TTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGA 63 consensus_9278#2 TAAAGCAATCTC---ATGCTAAATCAAAATTGAAAGAT-ACAAAGTCGTCGTTGACGAGT 69 * * ** * ** * * ** * * * * * * consensus_9278#0 GACAGAGAACAATCACTGTCAGT-TGAATGGATTAGTTTGGTACAGTCATTTACAGCTGC 478 consensus_9278#1 GACAGAGAACAATCACTGTCAGT-TGAATGGATTAGTTTGGTACAGTCATTTACAGCTGC 122 consensus_9278#2 AATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAG--CATTCATTTAGTATAAT 127 * * * ** * * ** * * ** *** * ** ******* consensus_9278#0 AC-TAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAG 537 consensus_9278#1 ACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAG 182 consensus_9278#2 GAGTTACGC--CCATCATTTATTT------------------------------------ 149 * * ** ** ** *** ** consensus_9278#0 TACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAG 597 consensus_9278#1 TACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAG 242 consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 TGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAAC 657 consensus_9278#1 TGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT--------- 293 consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 TCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTT 717 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 GTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATA 777 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 CATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTT 837 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 CTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGC 897 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 GGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACAC 957 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 TCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTC 1017 consensus_9278#1 ------------------------------------------------------------ consensus_9278#2 ------------------------------------------------------------ consensus_9278#0 CAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG 1056 consensus_9278#1 --------------------------------------- consensus_9278#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||