Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9278 cluster # 9278       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9278#0 length = 1056 sequences # 7  
consensus_9278#1 length = 293 sequences # 1  
consensus_9278#2 length = 149 sequences # 1  

consensusID : consensus_9278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1056
fasta sequence
                              [TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAGATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTATCTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCATTTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG]

[+] EMBL CD127540             [TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAGATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTATCTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCATTTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD122209             [                                                                                                                                                                                                                AACGTCATTGTTAGGACTCTTCACGTTACACGGAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAGTTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD127077             [                                                                                                                                                                                                                                                                                                                                      ACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTGGGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACctacctat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD116640             [                                                                                                                                                                                                                                                                                                                                                                         GACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD155856             [                                                                                                                                                                                                                                                                                                                                                                                                                                             AATCACTGTCAGTTGAATGGGTTAGTTTGGTACAGTCATTTACAGCTGCACTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAAC                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD131234             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCC                                                                                                                                              ]
[+] EMBL CD147048             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGAAACTT ACAGGAACTCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG]


>consensus_9278#0 TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAG ATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTAT CTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCAT TTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACG GAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAG TTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTG GGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTGTGCTGGTAGGAG ACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCAC TAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTAC CTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGA CTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAACTCC TGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTTGTC GACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATACAT CCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTTCTG ATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGCGGA CTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACACTCC ACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTCCAG ATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG



consensusID : consensus_9278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT]

[-] EMBL CD066746             [TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCTGCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT]


>consensus_9278#1 TAGACAAGTTCGTAGTTAGATTTTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTA GGAGACAGAGAACAATCACTGTCAGTTGAATGGATTAGTTTGGTACAGTCATTTACAGCT GCACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTG AGTACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGA AGTGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT



consensusID : consensus_9278#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence
                              [GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCGTTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTAGTATAATGAGTTACGCCCATCATTTATTT]

[+] EMBL CD090044             [GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCGTTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTAGTATAATGAGTTACGCCCATCATTTATTT]


>consensus_9278#2 GACTTTTCAGATGTAAAGCAATCTCATGCTAAATCAAAATTGAAAGATACAAAGTCGTCG TTGACGAGTAATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAGCATTCATTTA GTATAATGAGTTACGCCCATCATTTATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9278#0      TAGGTGGTAAATGTAGAGATGAATTATTTGATCGAGCGCAAAATCCATGAATTGAACGAG 60
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      ATCTGAAAGATTGCACGGTGACTGGATCTCGGTAATTACTCGTCAACGACGACTTTGTAT 120
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      CTTTCAATTTTGATTTAGCATGAGATTGCTTTACATCTGAAAAGTCAGAGTCCTGATCAT 180
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      TTACCTGAGTGGACAAAGAGATCAAAGCAACGTCATTGTTAGGACTCTTCACGTTACACG 240
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      GAACAAACGGTCTCGATGATCTGTCGTATACAGTCGTGTCGTGTGAATGGCAGTTGCTAG 300
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      TTGAGTCGATTTTCTGATATGATAAAACAGGAGGGCTAGGCTGCAATGTGTTAATAGGTG 360
consensus_9278#1      ------------------------------------------------------TAGACA 6
consensus_9278#2      -----------------------------------------------GACTTTTCAGATG 13
                                                                             **   

consensus_9278#0      GGACACTACTTATGGATGGTGAATGAGACTGAACAGATGATAAAATTG-TGCTGGTAGGA 419
consensus_9278#1      AGTTCGTAGTTA--GATT-TTCATCAAGTGAGTCAAATAATCTCGTAGGTGACGGTAGGA 63
consensus_9278#2      TAAAGCAATCTC---ATGCTAAATCAAAATTGAAAGAT-ACAAAGTCGTCGTTGACGAGT 69
                             *  *    **  *  ** *        * ** *     * *  *  *    * 

consensus_9278#0      GACAGAGAACAATCACTGTCAGT-TGAATGGATTAGTTTGGTACAGTCATTTACAGCTGC 478
consensus_9278#1      GACAGAGAACAATCACTGTCAGT-TGAATGGATTAGTTTGGTACAGTCATTTACAGCTGC 122
consensus_9278#2      AATTACCGAGATCCAGTCACCGTGCAAGTATGTTTATTTAG--CATTCATTTAGTATAAT 127
                       *      * *  ** *  * **   * *   **  *** *  ** *******       

consensus_9278#0      AC-TAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAG 537
consensus_9278#1      ACGTAATGCTACCTTCTTTTCCTTGGCTCTCACGTTCTGTTTTGAATGTTGTGCGTTGAG 182
consensus_9278#2      GAGTTACGC--CCATCATTTATTT------------------------------------ 149
                         * * **  ** ** ***  **                                    

consensus_9278#0      TACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAG 597
consensus_9278#1      TACCTTTCTTATTTTCACGTTTTAGAAAACTGGCTGACTTATGCATTCTAACAGGTGAAG 242
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      TGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTTCACAGGAAC 657
consensus_9278#1      TGACTTTGAGATGACTCTGTCCTGGAGACGGTGTAGATAGAGGGGAAACTT--------- 293
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      TCCTGAGCGTATCCTTATTTGGTGATGCTTTAAAAACCTTAGATTCCATTTCGCGCTGTT 717
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      GTCGACGCCGCTTGACACGTTCTACAAGAGCCTCTGTAAAACCACCATACTGGTTGCATA 777
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      CATCCGAGAAGTTTAAGTTTGAAATATCCTTTTTTGAAATAGTAGTCTGAACCGAAGCTT 837
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      CTGATATAGCAAACGTAGTTCCAGGATCCCGATAGGTAGCCGGGTTTAGAGGTGAATAGC 897
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      GGACTTCGCAAAGATCCACATTTTTTTGTTCCAAACCAGGATTTGCGTGATCTAAGACAC 957
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      TCCACCTCTTAAGTTCTTCAAGTTCAGTTCGTCTACGGGGACCTCCACCTCTGTGCTTTC 1017
consensus_9278#1      ------------------------------------------------------------
consensus_9278#2      ------------------------------------------------------------
                                                                                  

consensus_9278#0      CAGATGAAAAACGACCACGACCATTTCGTTTTGGCTTTG 1056
consensus_9278#1      ---------------------------------------
consensus_9278#2      ---------------------------------------
                                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)