cluster # 9282

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Schistosoma mansoni
cluster # 9282 cluster # 9282 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9282#0 length = 718 sequences # 8

consensus_9282#1 length = 388 sequences # 1

consensusID : consensus_9282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 718
fasta sequence

                              [TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG-ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG-AGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGGATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC]

[+] EMBL CD129481             [TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGT AAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAG                                                                                                                                                                                                                                                      ]
[-] EMBL CD066894             [                                                                                        GTAAAAATTGATCCAAATAGTTTATTTTTTTGCCTTGGAGCTAATGTTATATAGGATGCATTCATAATGTCCTGCTGCGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGGGGCGCTCCTACCACTACTATTACTATTACTGCCAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACCGTTTATCATTATTCATGGAGACAGTACTGCCGAGAAAAAGATACTGTATTTGTATGGGAACTAGTACCAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACCA                                                                                                                                                                                                                     ]
[+] EMBL CD066958             [                                                                                        GTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGTAGCAAATGTTAAATAAGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTACTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACCGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD129493             [                                                                                           AAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGATAGTTGAAGTGATTGTAGGAG AGCTACTGTTACC                                                                                                                                                                                                                      ]
[+] EMBL CD168052             [                                                                                                                                                     TCATAATGTCCTGCTGTGAATTATACTGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACC                                                                                                                                                                                                                      ]
[-] EMBL CD167931             [                                                                                                                                                      CATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAGAAGCTACTGCTACCAGT                                                                                                                                                                                                                   ]
[-] EMBL CD129453             [                                                                                                                                                                                                                                                                                                                                AAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACCA                                                                                                                                                                                                                     ]
[+] EMBL CD095835             [                                                                                                                                                                                                                                                                                                                                      ACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGGATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC]




>consensus_9282#0
TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGG
TGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTG
ACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTG
AGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGG
GAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCAT
GGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATT
AGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAAT
TACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGT
GATTGTAGGAGAGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGG
ATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGA
AGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAG
TAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC

consensusID : consensus_9282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [CTCGGTACCCTGGCATGTGGAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAGAGCTACTGTTACC]

[+] EMBL CD129549             [CTCGGTACCCTGGCATGTGGAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAGAGCTACTGTTACC]




>consensus_9282#1
CTCGGTACCCTGGCATGTGGAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAAT
GTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGG
AAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTAT
TCATGGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAG
TATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAA
CAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTG
AAGTGATTGTAGGAGAGCTACTGTTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9282#0      TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGG 60
consensus_9282#1      ------------------------------------------------------------
                                                                                  

consensus_9282#0      TGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTG 120
consensus_9282#1      ------------------------------------------------CTCGGTACCCTG 12
                                                                       *   *  * **

consensus_9282#0      ACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTG 180
consensus_9282#1      GCATGTGG--------AAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTG 64
                       * **  *        ********************************************

consensus_9282#0      AGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGG 240
consensus_9282#1      AGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGGAAGG 124
                      ********************************* **************************

consensus_9282#0      GAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCAT 300
consensus_9282#1      GAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCAT 184
                      ************************************************************

consensus_9282#0      GGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATT 360
consensus_9282#1      GGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATT 244
                      ************************************************************

consensus_9282#0      AGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAAT 420
consensus_9282#1      AGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAAT 304
                      ************************************************************

consensus_9282#0      TACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGT 480
consensus_9282#1      TACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGT 364
                      ************************************************************

consensus_9282#0      GATTGTAGGAGAGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGG 540
consensus_9282#1      GATTGTAGGAGAGCTACTGTTACC------------------------------------ 388
                      ************************                                    

consensus_9282#0      ATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGA 600
consensus_9282#1      ------------------------------------------------------------
                                                                                  

consensus_9282#0      AGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAG 660
consensus_9282#1      ------------------------------------------------------------
                                                                                  

consensus_9282#0      TAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC 718
consensus_9282#1      ----------------------------------------------------------