These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1374 fasta sequence [GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA-TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA] [-] EMBL CD121694 [GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATACATTGTTACATctattcg ] [+] EMBL CD149454 [ CAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCCTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTANGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAATATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCG ] [+] EMBL CD094991 [ AGGAAGTATGTAATAACGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGCGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAAACAATCGCTTTATAAAAAAT ] [-] EMBL CD123521 [ TGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCT ] [+] EMBL CD114851 [ TCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCCTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGA ] [+] EMBL CD133079 [ TGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGG ] [-] EMBL CD112125 [ GAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGAACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA] consensusID : consensus_9285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 383 fasta sequence [TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT] [-] EMBL SMRAP060 [TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGG ] [-] EMBL CD115655 [ GCGGCTCTTAGTTTATGTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCAGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9285#0 GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGA 60 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 TCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTT 120 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 GAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAA 180 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 GTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGT 240 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 AGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAA 300 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 AAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA 360 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGT 420 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 GAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCT 480 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 CCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTG 540 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 AACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAA 600 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 GTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTA 660 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 TGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGA 720 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 TCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAA 780 consensus_9285#1 -----------TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAA 49 *************************** ********************* consensus_9285#0 CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTAT----------------------- 817 consensus_9285#1 CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCT 109 ************************************* consensus_9285#0 ----------------TTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAA 861 consensus_9285#1 TCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAA 169 ******************************************** consensus_9285#0 CTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGG 921 consensus_9285#1 CTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGG 229 ********************** ************************************* consensus_9285#0 AGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTT 981 consensus_9285#1 AGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCA-CCCCCCCCCCACAT 288 ************************** *************** * * * * consensus_9285#0 TGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAG 1041 consensus_9285#1 TGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAG 348 ******** ********** ************************************** consensus_9285#0 TCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCA 1101 consensus_9285#1 TCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT------------------------- 383 ************* ********************* consensus_9285#0 CGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAG 1161 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 CAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCT 1221 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 AAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGG 1281 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 TCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGG 1341 consensus_9285#1 ------------------------------------------------------------ consensus_9285#0 AAGAAAACCTTAAGATATTATCAGCTGATCACA 1374 consensus_9285#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||