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Schistosoma mansoni
cluster # 9285 cluster # 9285       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9285#0 length = 1374 sequences # 7  
consensus_9285#1 length = 383 sequences # 2  

consensusID : consensus_9285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1374
fasta sequence
                              [GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA-TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA]

[-] EMBL CD121694             [GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATACATTGTTACATctattcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD149454             [                 CAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCCTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTANGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAATATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD094991             [                                                                                                                                                                                                                    AGGAAGTATGTAATAACGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGCGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAAACAATCGCTTTATAAAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD123521             [                                                                                                                                                                                                                                                                                TGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD114851             [                                                                                                                                                                                                                                                                                                                                                   TCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCCTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD133079             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGG                                                                                             ]
[-] EMBL CD112125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGAACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA]


>consensus_9285#0 GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGA TCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTT GAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAA GTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGT AGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAA AAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGT GAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCT CCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTG AACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAA GTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTA TGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGA TCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAA CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCG ATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGT TCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAAT TTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATG GGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTG TCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTT GAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGT TTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCA GCCATAAGGGACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGT AGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA



consensusID : consensus_9285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 383
fasta sequence
                              [TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT]

[-] EMBL SMRAP060             [TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGG                                                                                                                                                                                                                                     ]
[-] EMBL CD115655             [                                                                      GCGGCTCTTAGTTTATGTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCAGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT]


>consensus_9285#1 TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACG CTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATG CAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGT CGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGT TTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTA TACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCA GCCACTTTGGATGTAGCTGTACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9285#0      GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGA 60
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      TCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTT 120
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      GAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAA 180
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      GTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGT 240
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      AGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAA 300
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      AAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA 360
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGT 420
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      GAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCT 480
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      CCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTG 540
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      AACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAA 600
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      GTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTA 660
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      TGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGA 720
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      TCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAA 780
consensus_9285#1      -----------TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAA 49
                                 *************************** *********************

consensus_9285#0      CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTAT----------------------- 817
consensus_9285#1      CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCT 109
                      *************************************                       

consensus_9285#0      ----------------TTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAA 861
consensus_9285#1      TCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAA 169
                                      ********************************************

consensus_9285#0      CTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGG 921
consensus_9285#1      CTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGG 229
                      ********************** *************************************

consensus_9285#0      AGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTT 981
consensus_9285#1      AGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCA-CCCCCCCCCCACAT 288
                      ************************** ***************  *         * *  *

consensus_9285#0      TGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAG 1041
consensus_9285#1      TGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAG 348
                      ******** **********   **************************************

consensus_9285#0      TCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCA 1101
consensus_9285#1      TCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT------------------------- 383
                      ************* *********************                         

consensus_9285#0      CGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAG 1161
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      CAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCT 1221
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      AAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGG 1281
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      TCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGG 1341
consensus_9285#1      ------------------------------------------------------------
                                                                                  

consensus_9285#0      AAGAAAACCTTAAGATATTATCAGCTGATCACA 1374
consensus_9285#1      ---------------------------------
                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)