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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1374 fasta sequence
[GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA-TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA]
[-] EMBL CD121694 [GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATACATTGTTACATctattcg ]
[+] EMBL CD149454 [ CAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGATCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCCTTGAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAAGTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGTAGTCGAGGATTANGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAATATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCG ]
[+] EMBL CD094991 [ AGGAAGTATGTAATAACGTTGATTAAGTAGTCGAGGATTAGGATCTTGAGTTTCATTGGGCGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAAACAATCGCTTTATAAAAAAT ]
[-] EMBL CD123521 [ TGCACAAGCACTTTTCTGAACAACATAAAAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCT ]
[+] EMBL CD114851 [ TCAGTGCTGGGAAATCCCATA TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCCTGAGAGCAGTGTGAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCTCCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTGAACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAAGTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTATGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGATCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGA ]
[+] EMBL CD133079 [ TGACAACTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTTTGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGG ]
[-] EMBL CD112125 [ GAAACTGAGTCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCACGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAGCAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCTAAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGAACACACTGTGGTCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGGAAGAAAACCTTAAGATATTATCAGCTGATCACA]
consensusID : consensus_9285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 383 fasta sequence
[TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT]
[-] EMBL SMRAP060 [TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAACTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGG ]
[-] EMBL CD115655 [ GCGGCTCTTAGTTTATGTTGGGAAAAAGATTGTATATCTTCAGAATAATGCAAACTTCTTTTAGTAGTTCAGCGTCCGATTTGGGTGCTTGACTGACAACTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGGAGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCACCCCCCCCCCACATTGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAGTCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9285#0 GCTTGAGAGGATGAATCCAATGGCATAGGTATTTGGCTATGCAGTGTATTAGCTGTCAGA 60
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 TCAATTGGAATATGACTAAAATTCCTATTACTTTCTGGTTTTGTAACTGGTACATTCTTT 120
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 GAGCTACGTAGCTGGATTGTATTGGAATAGATACAGGAACTTTTGAACTCAGAAGATGAA 180
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 GTTTTATTACGTTCTGTTGTGCGGGAAAGATCAGGAAGTATGTAATAATGTTGATTAAGT 240
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 AGTCGAGGATTAGGATCTTGAGTTTCATTGGGTGCACAAGCACTTTTCTGAACAACATAA 300
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 AAAGGGACATTTGACTCAGGATTGACAGAGTGATGTAGATCAGTGCTGGGAAATCCCATA 360
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 TTTCTAACATGTTCCGAGACAATCGCATCATTAGAAATCATAACGCCTTGAGAGCAGTGT 420
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 GAAGAACAGGAATCAGTAGGCAACTGAACATAGGGTATTTGAGAATGCAAAGTCTTTTCT 480
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 CCGGTGCAATGAGCAGTTGAAAGACTTGAATGCATGGAATAATTTGAGGTGCTTGTACTG 540
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 AACACATTGTCTCCAGTGTTCGTGTTTTTTATGGTAGATGAACTTGTCGCCGTCATAGAA 600
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 GTCACAGACTGCTGACGATCGCGACGTGATCTTTTGCTCATAAATAGACCCGTGGCGGTA 660
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 TGTGGTAAATTTTGAGATATATGAGCAGTTCCTGGAGAAGCAAATGAGTGCCGTTTCCGA 720
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 TCAGATGACTTTGAATGTGACGAACTACTATGGTAGGCTCCTATTTGCCGAGCTTTTGAA 780
consensus_9285#1 -----------TGAATGTGACGAACTACTATGGTAGGCGCCTATTTGCCGAGCTTTTGAA 49
*************************** *********************
consensus_9285#0 CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTAT----------------------- 817
consensus_9285#1 CTAGACAGACGCTGGCGTTTAGCGGCTCTTAGTTTATCTTGGGAAAAAGATTGTATATCT 109
*************************************
consensus_9285#0 ----------------TTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAA 861
consensus_9285#1 TCAGAATAATGCAAACTTCTTTTAGTAGTTCTGCGTCCGATTTGGGTGCTTGACTGACAA 169
********************************************
consensus_9285#0 CTCAACTGAGTCGTACTATTTGCTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGG 921
consensus_9285#1 CTCAACTGAGTCGTACTATTTGGTGAATTCTTTGTCTGTTCAGAGGCCGAACTTTCTTGG 229
********************** *************************************
consensus_9285#0 AGAGTACAAGTTTGAGAAGTAGCTTGCGATAATCTCAATTTACTAGTAGTGTGTCTATTT 981
consensus_9285#1 AGAGTACAAGTTTGAGAAGTAGCTTGNGATAATCTCAATTTAGCA-CCCCCCCCCCACAT 288
************************** *************** * * * *
consensus_9285#0 TGTACAAAGTTATACTTAGCTCGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAG 1041
consensus_9285#1 TGTACAAAATTATACTTAGAAAGGTGTATTTCGGAAATGGGTGATGTGTAGGAAACTGAG 348
******** ********** **************************************
consensus_9285#0 TCTTGTGTCTCAGTCACTTTGGATGTAGCTGTACTACTGTCTTCAGATAGCTCAGAAGCA 1101
consensus_9285#1 TCTTGTGTCTCAGCCACTTTGGATGTAGCTGTACT------------------------- 383
************* *********************
consensus_9285#0 CGTAAGATTGGATGGTTCTGACTATGAAGATAGCAGGTTGAAATACCTGAGTTTTCGGAG 1161
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 CAAGAACTGTTGTGTAATGTAGTGTTGCCAATAAACCGTTTGTTTGCGGACTCAGAATCT 1221
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 AAAACCTTAGAAGACTTATGTGATCTTCTTCGTTTACCAGCCATAAGGGACACACTGTGG 1281
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 TCCGCTCATGCCAGGTGAGATACTCTCAATCTATTTCGTAGAGTGAAGGCCCTTCGACGG 1341
consensus_9285#1 ------------------------------------------------------------
consensus_9285#0 AAGAAAACCTTAAGATATTATCAGCTGATCACA 1374
consensus_9285#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||