These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 398 fasta sequence [CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT-AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTAAGTATCAGTGTAGCATTTTCTAACCTAGGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA] [+] EMBL CD147546 [CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCCAACGTGTTACCTACTGGCCGC ] [-] EMBL CD094840 [ TCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGATAAAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCATGTAATATTATTGCAATTGAACTGGTATAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTA ] [+] EMBL CD159573 [ TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT ] [+] EMBL CD090980 [ TATTTATATGCCAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT ] [+] EMBL CD159689 [ TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTCGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT ] [+] EMBL CD091002 [ TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACCAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT ] [+] EMBL CD171015 [ TATTTATATGCTAACCCTATTCGGCGTAGGCTCCGTTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGG TCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGCACTT ] [+] EMBL CD171053 [ TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCTCAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTAAGTATCAGTGTAGCATTTTCTAACCTAGGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA] consensusID : consensus_9292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGGGCTATTCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT] [+] EMBL BG932462 [AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGGGCTATTCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9292#0 CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCA 60 consensus_9292#1 ------------------------------------------------------------ consensus_9292#0 TTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGATAAAAAATATGACATGC 120 consensus_9292#1 ------------------------------------------------------------ consensus_9292#0 TTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGT 180 consensus_9292#1 ------------------------------------------------------------ consensus_9292#0 TATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGT 240 consensus_9292#1 ------------------------------------------------------------ consensus_9292#0 ACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAAC 300 consensus_9292#1 --AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAAC 58 ********************************************************** consensus_9292#0 GTGTTACCTACTGGCCGCAGCTTGTACTTGGT---AAGTATCAGTGTAGCATTTT-CTAA 356 consensus_9292#1 GTGTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGG 118 ******************************** * * * ** * *** ** consensus_9292#0 CCTAGGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA------ 398 consensus_9292#1 GCTAT-TCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT 165 *** * ** * * * * * * * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||