cluster # 9292

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9292 cluster # 9292 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9292#0 length = 398 sequences # 8

consensus_9292#1 length = 165 sequences # 1

consensusID : consensus_9292#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 398
fasta sequence

                              [CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT-AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTAAGTATCAGTGTAGCATTTTCTAACCTAGGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA]

[+] EMBL CD147546             [CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCCAACGTGTTACCTACTGGCCGC                                                                                ]
[-] EMBL CD094840             [             TCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGATAAAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCATGTAATATTATTGCAATTGAACTGGTATAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTA                                                                                            ]
[+] EMBL CD159573             [                         TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT                                                                     ]
[+] EMBL CD090980             [                         TATTTATATGCCAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT                                                                     ]
[+] EMBL CD159689             [                         TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTCGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT                                                                     ]
[+] EMBL CD091002             [                         TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGGATCGTCCACCAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTT                                                                     ]
[+] EMBL CD171015             [                         TATTTATATGCTAACCCTATTCGGCGTAGGCTCCGTTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCACAAAGG TCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGCACTT                                                                     ]
[+] EMBL CD171053             [                         TATTTATATGCTAACCCTATTCGGCGTAGGCTCCATTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGAT AAAAAATATGACATGCTTGTCAAACGCTCAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGTTATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGTACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTAAGTATCAGTGTAGCATTTTCTAACCTAGGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA]




>consensus_9292#0
CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCA
TTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGATAAAAAATATGACATGC
TTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGT
TATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGT
ACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAAC
GTGTTACCTACTGGCCGCAGCTTGTACTTGGTAAGTATCAGTGTAGCATTTTCTAACCTA
GGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA

consensusID : consensus_9292#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGGGCTATTCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT]

[+] EMBL BG932462             [AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGTGTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGGGCTATTCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT]




>consensus_9292#1
AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAACGT
GTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGGGC
TATTCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9292#0      CTGCACCACCGGGTCACTTACCAGATATTTATATGCTAACCCTATTCGGCGTAGGCTCCA 60
consensus_9292#1      ------------------------------------------------------------
                                                                                  

consensus_9292#0      TTTTGATGCGAAGTGCGGGTTGCACAATAAATGATATGTGGGATAAAAAATATGACATGC 120
consensus_9292#1      ------------------------------------------------------------
                                                                                  

consensus_9292#0      TTGTCAAACGCACAAAGGATCGTCCACTAGCTTCAGGTTCATTAACCTTTCCTCAGGCGT 180
consensus_9292#1      ------------------------------------------------------------
                                                                                  

consensus_9292#0      TATTGTTTCTTGCTGTTCAGCTAGCGACTTCGCTTGTAATATTATTGCAATTGAACTGGT 240
consensus_9292#1      ------------------------------------------------------------
                                                                                  

consensus_9292#0      ACAGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAAC 300
consensus_9292#1      --AGTGTATTTCTTGGTATCCTGTCATTGGTTCCTGTCATCACGTATCCTTTGTTCAAAC 58
                        **********************************************************

consensus_9292#0      GTGTTACCTACTGGCCGCAGCTTGTACTTGGT---AAGTATCAGTGTAGCATTTT-CTAA 356
consensus_9292#1      GTGTTACCTACTGGCCGCAGCTTGTACTTGGTCTTACATTCAACTGGGGTGCTTTGCTGG 118
                      ********************************   *  *   * **  *   *** **  

consensus_9292#0      CCTAGGTTCATTGCTATGTGGTTTTACAGGCTTTACATTGAA------ 398
consensus_9292#1      GCTAT-TCTGCTGTCACAGGTTCTGTTAACCCTCTGATTTCAATCCCT 165
                       ***  *    **  *   * * *   *  * *   ***  *