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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1353 fasta sequence
[GAGATCTAGCTAATATTTTATGGTTAAAAAGTCACAGTTCTGAAGCATGGTTTGAGCGTAGAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAGGAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTGA-TTTGGTGATTGCTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATTTCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGGTGCACGCAATTCAGATTATCCACATAGACAAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGACAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAATTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCAAAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACTTTCTTATTTAAA--AAAAAAATAAAAAAAA]
[+] EMBL CD179996 [GAGATCTAGCTAATATTTTATGGTTAAAAAGTCACAGTTCTGAAGCATGGTTTGAGCGTAGAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAGGAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTGATTTTGGTGATTGCTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATTTCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTNTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCA ]
[-] EMBL CD095389 [ AAGCATGGTTTGAGCGTAGAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAGGAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTGA TTTGGTGATTGTTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATTTCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAA ]
[-] EMBL CD167001 [ CAGAGAAAGTACCATTTCGGTTAACACGTATGATTATATCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAGATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGTCGGCGGCGGTATAGCTCCAGCAATTGGAACATACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGT ]
[+] EMBL CD083104 [ GTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGGTGCACGCAATTCAGATTATCCACATAGACAAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGACAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAATTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCANAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTG ]
[-] EMBL CD146029 [ AAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGACAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAATTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATGTTTTCTGCAA ]
[-] EMBL CD076678 [ AGTGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACCTTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACATAGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCAAAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACT ]
[-] EMBL AI395235 [ ACGTTTAAGAATGCAAATGGAATCCGGTCACGTAGTAGTTGAACGTCATGGACTACAAGGGCT ATATTTTCTGCAAAACCTCCAAGCACTGAAGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTCTGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATCTTTCATTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACTTTCTTATTTAAA AAAAAAATAAA ]
[-] EMBL AI395662 [ GAATTA GCCAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGTTTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGATGTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCAATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTTACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAAATACTTTCTTATTTAAAGGAAAAAAAAAAAAAAAA]
consensusID : consensus_9295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[AATAATAATTTGGTAACTAAATTCACCTACATATTTATTTTAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGG]
[+] EMBL CD114917 [AATAATAATTTGGTAACTAAATTCACCTACATATTTATTTTAGGTGACAGGAATAGATGGTGTTTATCGCCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGTTTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGAATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCCAGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAACTGCTAATAATCAGTCAGTACAGTTGAAACCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9295#0 GAGATCTAGCTAATATTTTATGGTTAAAAAGTCACAGTTCTGAAGCATGGTTTGAGCGTA 60
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 GAACGAATTTTACACGATCTATGGCTACCATGTCTATGGTTGGTTATATTTTGGGGTTAG 120
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 GAGATAGGCATCCATCGAATATAATGTTGTCTCGAGTGACAGGCAAAGTGGTGCATATTG 180
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 ATTTGGTGATTGCTTTGAAGTGGCTACAATGAGAGAAAAATTCCCAGAGAAAGTACCATT 240
consensus_9295#1 ---------------------------------------------------AATAATAAT 9
* ** * *
consensus_9295#0 TCGGTTAACACGTATGATTATTTCTGCTATGGAGGTGACAGGAATAGATGGTGTTTATCG 300
consensus_9295#1 TTGGTAACTAAATTCACCTACATATTTATTTTAGGTGACAGGAATAGATGGTGTTTATCG 69
* *** * * * ** * * * ****************************
consensus_9295#0 CCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGT 360
consensus_9295#1 CCATACCTGTGAAATGGTTATGTCTCTTTTACGTTCCAATCGTGAAAGTCTTCTTGCAGT 129
************************************************************
consensus_9295#0 TTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGA 420
consensus_9295#1 TTTAGAAGCATTTATTCATGATCCATTGTTACAGTGGGTACTCCATGAAAACCGTAAAGA 189
************************************************************
consensus_9295#0 ATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCC 480
consensus_9295#1 ATTTAATCACTTAGAGAATAAGCTAGACGACGGAGGTGGTGGCGGCGGCGGTATAGCTCC 249
************************************************************
consensus_9295#0 AGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAAC 540
consensus_9295#1 AGCAATTGGAACAAACTGTTTGGCAAATGGTACTGGTGGCGGTGTTCATGGTGTAACAAC 309
************************************************************
consensus_9295#0 TGCTAATAATCAGTCAGTACAGTTGAAACCTGGTGCACGCAATTCAGATTATCCACATAG 600
consensus_9295#1 TGCTAATAATCAGTCAGTACAGTTGAAACCTGG--------------------------- 342
*********************************
consensus_9295#0 ACAAGTGTATGCTCATCAACAGCATCATGCTGTTCAAAATACACTTCGACGTCCAACAGA 660
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 CAAAAGTAATAATTTAACCTCAGGTCAACAGAATTCACAAGGACATTTTCAACAGCAAAA 720
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 TTTGAATAGAAGAGCTAATTCGCCGAACAGGGTGTTTACAAATCCAAATCATCCAGACAG 780
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 TGCTTCATTGCGTGATCCACAAAAGGTGAATCAATGGCGTCATCATTTGTGTAATGGACC 840
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 TTGGTTTGGTTGTTATGAAACTGCTAAACGTTTAAGAAAGCAAATGGAATCCGGTCACAT 900
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 AGTAGTTGAACGTCATGGACTACAAGGGTTCATATTTTCTGCAAAACCTCCAAGCACTGA 960
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 AGACTCATGTATTGATTCAGAATCCCAGCCTGTTACCTTAGGAAATGTACGTGCACGTTC 1020
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 TGTAATGGAAAGAATTAGGCAAAAATTGACTGGCACTGAGAGAGATCAAGTGATGAGCGT 1080
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 TTCGGCTCAAGTAGACTTCCTTATACGTGAAGCAACTTCAAATCAAAATTTATGCCAGAT 1140
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 GTATATAGGCTGGTGTGCTTTCTGGTGATACATTAATTTTATTCAATGATCAATTCATCA 1200
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 ATCAGCTATTGTATTTTTCTTTTTACGTTACCAGTGAATTATTTATGAAAGTGTAAATTT 1260
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 ACTTTATCAGTTAACAAACTGGTTTTCATCTAAAACATTGTACATTTTTGTTGATTAAAA 1320
consensus_9295#1 ------------------------------------------------------------
consensus_9295#0 ATACTTTCTTATTTAAAAAAAAAATAAAAAAAA 1353
consensus_9295#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||