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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1064 fasta sequence
[AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCCTCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAGCGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC]
[+] EMBL CD068918 [AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCCTCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGATGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACC ]
[-] EMBL BG931404 [ CCGTAGCTTCGGGTGTTAAGGGTCTTCCAGGTAGTAGAGGACCAGTTGGTCCAAATGGGATGAGAGGACCGCTTGGATTAATTGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGCAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACAAGGTCCTCCAGGGCAAATAGGAGCACTTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTGACCGGGCCACCTGGTGATGGTGGGCTTCTTG ]
[+] EMBL AI975010 [ TGGACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGACAACCTGGCTTAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGG ]
[+] EMBL CD134782 [ GGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGATGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGTCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATA ]
[+] EMBL CD190835 [ GGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAATAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGGGCTGACCGGGCCACCTGGTGTTGGTGGGCCTCCTGGATTGCCAGGAATTCCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACA ]
[-] EMBL BG930909 [ GGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCTATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGCTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAA ]
[-] EMBL CD093363 [ GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGTACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATG ]
[+] EMBL CD060704 [ cgcaggGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAAGCGACGATGAAAGTGCAGATTTTGACCCATCAATTGAATTCGAAGATACCGATGAGAATGATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGATGAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCTATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCTGTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGAGCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC]
consensusID : consensus_9296#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGTCAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC]
[+] EMBL CD061369 [GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCACGAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCGTTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGGGTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCACCGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTGGAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAATGGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGAGGAGGAAGATATTTTTGAAGCATTGCGTCAAGTTGGAAGACTTGTGAATAGTTGGAATAGTGGGAGTGGAACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9296#0 AGGACCAGACGGAAATCCAGGAATTCAGGGCCCACCCGGAGCTTCGGGTGTTAAGGGTCC 60
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 TCCAGGGAGTAGAGGACCAGTTGGTCCAACTGGGATGAGAGGACCGCCTGGATTAATTGG 120
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 ACAGCCCGGGCCACCAGGTAAACAAGGAAGTCAAGGAAGACCTGGAAAACCAGGGCCAGA 180
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 TGGATTTGAAGGGAAACGAGGTCCTCCAGGGGAAATAGGAGCACCTGGAGTTCCTGGAAA 240
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 TAAAGGACCAGTGGGAGACGAAGGAGAACCTGGCTCAAGAGGTGCATCCGGAAATATGGG 300
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 TCTTACCGGGCCACCTGGTGATGGTGGGCCTCCTGGATTGCCAGGAATTC-CAGGTTCAC 359
consensus_9296#1 -----------------GTGATGGTGGGCCTCCTGGATTGCCAGGAATTCGCAGGTTCAC 43
********************************* *********
consensus_9296#0 GAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCG 419
consensus_9296#1 GAGGAACACAAGGACCACCGGGTGAAGTTGGCCTTAAAGGTGAAGCGGGTCTTCCAGGCG 103
************************************************************
consensus_9296#0 TTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGG 479
consensus_9296#1 TTCCAGGACCAATTGGGCAACCAGGACCAATGGGACCACCAGGTATTCAAGGTCCACTGG 163
************************************************************
consensus_9296#0 GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCAC 539
consensus_9296#1 GTGAACCAGGACCGCCAGGAAATGATGGTCCTCCGGGAGCCATTGGTTTGCCTGGACCAC 223
************************************************************
consensus_9296#0 CGGGAGAGTTTAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTG 599
consensus_9296#1 CGGGAGAGTATAAAACTGACTATACATCATTGTTTAGTCGTAGAAGAGACACAGATGTTG 283
********* **************************************************
consensus_9296#0 GAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAAT 659
consensus_9296#1 GAATGATGCAAGCTGATGAACCCCGTAATAGAGGAAGGAGAATACGCCGTTCATATGAAT 343
************************************************************
consensus_9296#0 GGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATGTTGATGATGAAA 719
consensus_9296#1 GGAGTGATGAAGATTATGATCCAAGCAAAGAAACTGATCCTAATGATG------------ 391
************************************************
consensus_9296#0 GCGACGATGAAAGTGCAGATTTTGACCCATCA-ATTGAATTCGAAGATACCGATGAGAAT 778
consensus_9296#1 ---AGGAGGAAGATAT---TTTTGAAGCATTGCGTCAAGTTGGAAGACT----TGTGAAT 441
* ** *** * ****** *** * * ** ***** ** ****
consensus_9296#0 GATGATGATGAAGAGGAAGGAGATGAAGAGGATGATGATGACGACGACGACGATGATGAT 838
consensus_9296#1 AGTTGGAATAGTGGGAGTGGAACTC----------------------------------- 466
* ** * * *** *
consensus_9296#0 GAAGACGAAGAGGATGACGACGATGACGATGAACTGACTGGTTTTTCCATACCACGTTCT 898
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 ATAGCAGACACTGAAGAATCAGAACCTGGAATAGATAGTGGGACAACTGCATGCGTTGCT 958
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 GTTCTTGTACCAGTCAATGGTGTTGTACGCTTGTATGTTGCTAATGCTGGCGATTCACGA 1018
consensus_9296#1 ------------------------------------------------------------
consensus_9296#0 GCTGTACTCTGTCGTGGTGGTGCTGCAGTCGATTTATCAGTTGATC 1064
consensus_9296#1 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||